KEGG   Streptomyces sp. 4F: ASR50_19725
Entry
ASR50_19725       CDS       T04265                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
strf  Streptomyces sp. 4F
Pathway
strf03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:strf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    ASR50_19725
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:strf03400]
    ASR50_19725
Enzymes [BR:strf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     ASR50_19725
DNA repair and recombination proteins [BR:strf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      ASR50_19725
SSDB
Motif
Pfam: DEAD UvrB_inter TRCF CarD_TRCF_RID Helicase_C ResIII UB2H AAA_22 RecG_dom3_C
Other DBs
NCBI-ProteinID: ALV51414
Position
4401950..4405483
AA seq 1177 aa
MSLHGLLDAVVKDTALAEAVTAAADGNRMHVDLVGPPAARPFAVAALARDAGRPVLAVTA
TGREAEDLAAALRSLLPPQGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVSLRTGQSADLNDVVDALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDIEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDEVRERARVLAEEHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMTV
VCDPERVRTRASDLVATSQEFLQASWAATAGGGEAPIDVGAASLWSLADVRDRARELDMP
WWTVSPFAADEELDADTLKLGLHAPESYRGDTARALADTKGWIADGWRTAYVTEGHGPAA
RTVEVLGGEGIAARLDNDLGELTPSVVHVSCGCIDHGFVAPALKLAVLTETDLTGQKASG
REGARMPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGQDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVNVRALSRFQTDTEAKA
VLEGLKDGSVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYDQRQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLETGE
VEEEAPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEEDIAAVREELVDRYGKL
PEPVENLLLVAGLRMLARACAVGEIVLQGTNIRFAPVELRESQELRLKRLYPGSVIKPTS
HQVLVPRPKTAKVGGKPLVGRDLLGWVGEFLTSVLGS
NT seq 3534 nt   +upstreamnt  +downstreamnt
atgagcctgcacggtctgctcgacgccgtcgtcaaggacaccgccctcgcggaagcggtc
acggccgccgccgacggcaaccgcatgcacgtcgacctggtcggcccgcccgcggcccgt
ccgttcgcggtcgccgccctggcccgtgacgccggccgccccgtgctcgccgtgacggcc
acgggacgcgaggcggaggacctggcggccgccctgcgctcgctgctcccgccccagggc
gtcgtggagtacccgtcctgggagacgctgccgcacgagcggctcagcccccgcagcgac
accgtcggccgccgcctcgccgtgctgcggcgcctggcccacccccgccccgacgacccc
gagaccggccccgtctccgtcgtcgtcgcccccgtgcgctccgtgctccagccgcaggtc
aagggcctcggcgacctggagcccgtctccttgcgcaccgggcagagcgccgacctgaac
gacgtcgtcgacgccctcgccgccgccgcgtacgcgcgcgtggagctggtggagaagcgc
ggcgagttcgcggtgcgcggcggcatcctcgacgtgttcccgcccaccgaggagcacccc
ctgcgggtggagttctggggcgacgacatcgaggagatccgctacttcaaggtcgccgac
cagcggtccctggaggtcgccgagcacggactgtgggcgccgccctgccgtgagctgctg
ctcaccgacgaggtgcgcgagcgggcgcgggtgctcgccgaggagcacccggagctgggc
gagctgctcgggaagatcgccgagggcatcgcggtggagggcatggagtccctcgccccg
gtcctcgtcgacgacatggagctgctgctggacgtgctgcccaagggcgccatgaccgtc
gtctgcgacccggagcgggtgcgcacgcgcgcctccgacctggtcgccacctcgcaggag
ttcctgcaggcgtcctgggcggccaccgccggcgggggcgaggcgcccatcgacgtcggc
gccgcctccctgtggtccctcgccgacgtccgggaccgggcccgcgagctggacatgccg
tggtggacggtgtcgccgttcgccgccgacgaggaactcgacgccgacacgctcaagctg
ggcctgcacgcccccgagagctaccgcggcgacaccgcgcgggcgctcgccgacaccaag
ggctggatcgccgacggctggcgcaccgcctacgtcaccgagggccacggcccggccgcc
cgcaccgtggaggtgctcggcggggagggcatcgccgcccgcctcgacaacgacctgggc
gagctgaccccgtccgtcgtgcacgtgtcctgcggctgcatcgaccacggcttcgtcgcc
ccggcgctcaagctggccgtgctcaccgagaccgacctcaccggccagaaggcgtccggc
cgcgagggcgcccggatgcccgcccggcgccgcaagaccatcgacccgctcacgctggag
gcgggcgactacatcgtccacgagcagcacggcgtcggccggtacatcgagatggtgcag
cgcaccgtgcagggcgccacccgcgagtacctggtcgtggagtacgccccggccaagcgc
ggccagcccggcgaccgtctgtacatccccaccgaccagctcgagcagatcaccaagtac
gtcggcggcgaggcgcccaccctgcaccggctcggcggtgccgactggaccaagaccaag
gcgcgcgccaagaaggccgtcaaggagatcgccgccgacctgatcaagctgtacagcgcg
cggatggcggcgccgggccacgccttcgggcaggacaccccctggcagcgcgagctggag
gacgccttcccctacgcggagacgcccgaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagtcggtccccatggaccggctgatctgcggcgacgtcggttacggcaag
accgagatcgcggtgcgggccgcgttcaaggccgtgcaggacggcaagcaggtcgcggtg
ctggtgccgacgacgctgctggtgcagcagcacttcgggacgttcagcgagcggtacgca
cagttcccggtgaacgtgcgggcgctgtcgcgcttccagaccgacaccgaggcgaaggcg
gtcctggagggtctgaaggacggctcggtggacgtggtgatcggcacccaccggctgttc
tcctccgagaccaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcggttc
ggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgacgtgctcaccatg
tccgccacgcccatcccgcggaccctggagatggcggtcaccggcatccgcgagatgtcg
acgatcaccaccccgcccgaggagcgccacccggtgctcaccttcgtcggcccctacgac
cagcggcagatcggcgccgccatccgccgtgaactgctgcgcgagggccaggtcttctac
atccacaaccgcgtcgagtccatcgaccgggcggcggcccggctccgcgagatcgtgccc
gaggcgcgcatcgcgaccgcccacggccagatgtcggagcaggcgctggagcaggtcgtc
gtcgacttctgggagaagaagttcgacgtgctggtgtcgacgacgatcgtcgagtccggc
atcgacatctccaacgccaacaccctgatcgtcgagcgcggcgacaacttcggcctctcc
cagctgcaccagctgcgcggccgcgtcggccgcggccgcgagcgcgggtacgcgtacttc
ctctacccgccggagaagccgctgacggagaccgcgcacgaacgtctcgcgaccatcgcg
cagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgcggc
gcgggcaacctgctcggcggcgagcagtccgggcacatcgcgggcgtcggcttcgacctg
tacgtgcggatggtcggcgaggccgtcgccgactaccgccgccagctggagaccggcgag
gtggaggaggaggcgccgctcgaggtgaagatcgagctgccggtcgacgcgcacgtcccg
cacgactacgcgcccggcgagcggctgcgcctccaggcctaccgggccatcgcctccgcg
aacagcgaggaggacatcgcggccgtccgcgaggaactggtcgaccgctacggcaagctg
ccggagccggtggagaacctgctgctggtggcgggcctgcggatgctcgcgcgggcgtgc
gcggtcggcgagatcgtgctgcagggcacgaacatccggttcgcgccggtggagctgcgc
gagtcgcaggagctgcggctcaaacgtctctaccccggctcggtgatcaagccgacgtcc
caccaggtgctggtgccgcgcccgaagaccgcgaaggtcggcggcaagccgctggtcggg
cgggacctgctcggctgggtgggggagttcctcacctcggtcctggggtcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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