KEGG   Streptomyces sp. PAMC 26508: F750_4841
Entry
F750_4841         CDS       T02619                                 
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
strp  Streptomyces sp. PAMC 26508
Pathway
strp03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:strp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    F750_4841 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:strp03400]
    F750_4841 (ligD)
Enzymes [BR:strp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     F750_4841 (ligD)
DNA repair and recombination proteins [BR:strp03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     F750_4841 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol
Other DBs
NCBI-ProteinID: AGJ57280
Position
complement(5020803..5021696)
AA seq 297 aa
MTPITEVEGRRLTLSNLDKVLYPATGTTKGEVLHYYAATAARVMLPHLRDRPLSFLRYPD
GPEGLRFFTKNPPPGTPDWVRTAPVPRSDDPGARQVLAQDLPSLMWAANLVVEFHTHQWR
QDSPAVADRMVFDLDPGPPAGVVECCAVALWLRERLAGDGLSAYGKTSGSKGLHLLVPLE
PTPSGKVTAYAKKLAVEAQGALPELAVHRMTRALRPGKVFVDFSQNAAAKTTAAPYTLRA
KARPTVSAPVTWEEIEECGAPDDLVLLAGDMAARLERHGDLLAPLNDPGQAGALPGG
NT seq 894 nt   +upstreamnt  +downstreamnt
atgacgccgatcacggaggtggaggggcggcgcctgacgctcagcaatctcgacaaggtg
ctgtatccggccaccgggacgaccaagggcgaggtgctgcactactacgcggccacggcg
gcacgggtcatgctgccgcacctgcgggaccgcccgctgtcgttcctgcggtatccggac
ggccccgaggggctgcgcttcttcaccaagaacccgccgcccggtacacccgactgggtg
cgcaccgccccggtgccccgcagcgacgaccccggcgcccgtcaggtcctcgcccaggac
ctgccgtcgctgatgtgggcggcgaacctggtggtggagttccacacccaccagtggcgg
caggactcccccgccgtggccgaccggatggtgttcgacctggaccccggtccgcccgcg
ggtgtggtggagtgctgcgcggtcgccctctggctgcgggagcggctggccggggacggg
ctgtccgcgtacgggaagacctccggctccaaggggctccatctgctcgtccccctggag
ccgaccccctccgggaaggtgacggcgtacgcgaagaagctcgcggtcgaggcacagggc
gcgctgcccgaactggccgtgcaccggatgacgcgtgcgctgcgcccggggaaggtgttc
gtggatttcagccagaacgccgcggccaagacgaccgccgcgccctacaccctgcgggcg
aaggcccgcccgacggtgtccgcgccggtcacctgggaggagatcgaggagtgcggggcg
ccggacgatctcgtcctgctcgccggtgacatggccgcccgcctggagcggcacggggat
ctcctcgctccgctgaacgatcccgggcaggccggggctctccccgggggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system