KEGG   Streptomyces sp. SAT1: A8713_12630
Entry
A8713_12630       CDS       T04706                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
strt  Streptomyces sp. SAT1
Pathway
strt03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:strt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    A8713_12630
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:strt03400]
    A8713_12630
Enzymes [BR:strt01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     A8713_12630
DNA repair and recombination proteins [BR:strt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      A8713_12630
SSDB
Motif
Pfam: DEAD TRCF UvrB_inter CarD_TRCF_RID Helicase_C ResIII AAA_22 MFD_D3 RecG_dom3_C UB2H
Other DBs
NCBI-ProteinID: ANH91904
UniProt: A0A1A9IZE2
Position
complement(2923920..2927468)
AA seq 1182 aa
MSLHGLLDAVVKDPALAEAITAATDGNRMHVDLVGPPAARPLAIAALARESGRPVLAVTA
TGREAEDLAAALRSLLPEEGVAEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVSLRTGESADLNAVVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDIEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTEDVRARARALAERHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGALAV
VCDPERVRTRASDLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRDRARELDMM
WWSVSPFAADESAYGTEGDGDTLKLGMHAPDTYRGDTAKALADTKGWLAEGWRTVFVTEG
HGPAARTVEVLGGEGIAARLDTDLGAVSPSVVHVACGCIDHGFVDPGLKLAVLTETDLTG
QRTAGRDGARMPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEY
APAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLI
KLYSARMAAPGHSFGTDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGD
VGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVKVKALSRFQTD
TEAKAVLEGLREGSVDVVIGTHRLFASETRFKDLGLVIVDEEQRFGVEHKEQLKKLRANV
DVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAVRRELLRE
GQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKRFDVLVSTT
IVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHER
LATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQ
LETGEIEEEAPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEEDIKAVREELTD
RYGKLPEPVENLLLVAGLRMFARACGVGEIVLQGANIRFAPVELRESQELRLKRLYPGAL
LKPAAHQVLVPRPKTAKVGGKPLVGRELLAWVGEFLTSVLGS
NT seq 3549 nt   +upstreamnt  +downstreamnt
atgagcctgcacggtctgctcgacgccgtcgtcaaggaccccgccctcgcggaagcgatc
accgcggccacggacggcaatcgcatgcacgtcgacctcgtcggcccgcccgcggcccgc
cccctggcgatcgccgcgctggcccgcgagtccggccgcccggtgctcgcggtgacggcg
accggccgcgaggccgaggacctggcggccgccctgcgctcgctgctcccggaggagggc
gtcgcggagtacccctcctgggagacactgccgcacgagcggctcagcccgcgcagcgac
accgtgggccgtcgcctggccgtgctgcgccgcctggcgcatccgcggcccgacgacccc
gagaccggcccggtctccgtcgtcgtcgcccccgtgcgctcggtgctccagccgcaggtc
aagggcctgggcgacctggagcctgtctccctgcgcaccggcgagagcgccgacctgaac
gcggtggtggaagccctggccgccgccgcgtacgcgcgcgtggagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctcgacgtcttcccgcccaccgaggaacacccc
ctgcgcatcgagttctggggcgacgacatcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggaggtcgccgagcacggcctgtgggccccgccctgccgcgagctgctg
ctcaccgaggacgtccgcgcccgcgcgcgtgccctggccgagcgccacccggagctgggc
gagctgctcggcaagatcgccgagggcatcgcggtggagggcatggagtccctggccccg
gtcctcgtcgacgacatggaactgctgctggacgtgctgcccaagggcgccctggccgtg
gtgtgcgacccggagcgggtgcgcacccgcgcctccgacctggtggccacctcgcaggag
ttcctccaggcgtcctgggcggccaccgcgggcggcggcgaggcccccatcgacgtcggc
gcggcctccctgtggtccatcgccgacgtccgggaccgggcgcgcgagctggacatgatg
tggtggtccgtctcgcccttcgcggccgacgagagcgcctacggcaccgagggcgacggc
gacaccctcaagctgggcatgcacgcgcccgacacctaccgcggcgacaccgccaaggcg
ctcgccgacaccaagggctggctggccgagggctggcgcaccgtcttcgtcaccgagggc
cacggcccggccgcccgcacggtggaggtgctgggcggcgagggcatcgccgcccgcctg
gacacggacctcggggcggtgtccccgtccgtggtgcacgtggcgtgcggctgcatcgac
cacggcttcgtcgaccccggcctgaagctggccgtgctcaccgagaccgacctgaccgga
cagcgcaccgccggccgggacggcgcccgcatgccggcccgccgccgcaagaccatcgac
ccgctcaccctggaggcgggcgactacatcgtgcacgagcagcacggcgtgggccgctac
atcgagatggtgcagcgcaccgtgcagggcgccacccgcgagtatctggtggtggagtac
gccccggccaagcgcggccagcccggcgaccgcctctacatccccaccgaccagctggag
cagatcaccaagtacgtcggcggcgaggcccccacgctgcaccggctcggcggcgccgac
tggaccaagaccaaggcgcgcgcgaagaaggcggtcaaggagatcgccgccgacctgatc
aagctgtactccgcccggatggccgcccccgggcactccttcggcaccgacactccctgg
cagcgcgagctggaggacgccttcccgtacgcggagacgcccgaccagctgaccaccatc
gccgaggtcaaggaggacatggagaagtcggtcccgatggaccgcctgatctgcggcgac
gtggggtacggcaagacggagatcgcggtccgcgccgccttcaaggccgtccaggacggc
aagcaggtcgcggtcctggtccccaccaccctgctggtccagcagcacttcggcaccttc
tccgagcgctacgcgcagttcccggtgaaggtgaaggcgctctcccgcttccagaccgac
accgaggcgaaggcggtcctcgaagggctgcgcgagggctcggtcgacgtcgtcatcggc
acccaccggctgttcgcctccgagaccaggttcaaggacctgggcctggtcatcgtcgac
gaggagcagcgtttcggcgtcgagcacaaggagcagctgaagaagctgcgcgccaacgtc
gacgtgctgacgatgtccgcgaccccgatcccgcgcaccctggagatggcggtcaccggc
atccgcgagatgtccacgatcaccaccccgcccgaggagcgccacccggtgctgaccttc
gtcgggccgtacgaggagaagcagatcggcgcggccgtccgccgcgaactgctgcgcgag
ggccaggtcttctacatccacaaccgggtggagtccatcgaccgggccgccgcccggctg
cgcgagatcgtgcccgaggcgcggatcgccaccgcccacggccagatgtccgaacaggcc
ctggaacaggtcgtcgtggacttctgggagaagcggttcgacgtgctggtctccacgacg
atcgtcgagtccggcatcgacatctccaacgccaacaccctgatcgtggagcgcggcgac
aacttcggcctctcccagctgcaccagttgcgcggccgggtgggccgcggccgcgagcgc
ggctacgcctacttcctctacccgccggagaagccgctcaccgagaccgcgcacgagcgg
ctggcgaccatcgcccagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggac
ctggagatccgcggcgccggaaacctgctgggcggcgagcagtccggccatatcgcgggc
gtcggcttcgacctgtatgtgcggatggtcggcgaggcggtggcggactaccggcggcag
ctggagaccggtgagatcgaggaggaggcgccgctggaggtcaagatcgagctcccggtc
gacgcgcacgtcccgcacgactacgcgcccggcgagcggctgcgcctccaggcgtaccgg
gccatcgcctcggccaattcggaggaggacatcaaggccgtccgcgaggagctgaccgac
cgttatggcaagctgcccgagccggtggagaacctgctgctggtggccgggctgcggatg
ttcgcccgcgcctgcggggtcggtgagatcgtgctccagggcgccaacatccgcttcgcg
ccggtggagctgcgcgagtcccaggagctgcgcctgaagcggctctacccgggcgcgctg
ctcaagccggccgcccaccaggtgctcgtcccgcgccccaagaccgcgaaggtcggcggc
aagccgctggtcggccgggaactgctggcctgggtgggcgagttcctgacctccgtgctc
gggtcgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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