KEGG   Salmonella enterica subsp. enterica serovar Typhi Ty2: t2960
Entry
t2960             CDS       T00121                                 
Symbol
recJ
Name
(GenBank) single-stranded DNA-specific exonuclease
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
stt  Salmonella enterica subsp. enterica serovar Typhi Ty2
Pathway
stt03410  Base excision repair
stt03430  Mismatch repair
stt03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:stt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    t2960 (recJ)
   03430 Mismatch repair
    t2960 (recJ)
   03440 Homologous recombination
    t2960 (recJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:stt03400]
    t2960 (recJ)
DNA repair and recombination proteins [BR:stt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     t2960 (recJ)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     t2960 (recJ)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      t2960 (recJ)
SSDB
Motif
Pfam: DHHA1 DHH RecJ_OB Glyco_transf_4
Other DBs
NCBI-ProteinID: AAO70512
UniProt: Q8Z3X7
Position
complement(3049966..3051699)
AA seq 577 aa
MKQQRQLRRREADETAELPADLPPLLRRLYASRGVRSARELERSVKGMLPWQQLSGIDNA
VEILYNAFREGTRIIVVGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPE
VVDQAKARGAQLIVTVDNGISSHAGVAHAKTLRIPVIVTDHHLPGDTLPDAEAIINPNLR
DCEFPSKSLAGVGVAFYLMLALRTFLRDKGWFDERGIAPPNLAELLDLVALGTVADVVPL
DANNRILTWQGLSRIRAGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNLGEARVLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP
DLMIKFGGHAMAAGLSLEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSME
VAQLLRDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTT
CWPDNGVREVELAYKLDINEFRGNRSLQIIIDDIWPL
NT seq 1734 nt   +upstreamnt  +downstreamnt
gtgaaacaacagagacaacttcgtcggcgcgaggctgatgagacggcggaactccccgcc
gatcttcctccattactacgacgtctatatgccagccggggcgttcgtagcgcccgcgaa
ctggagcgcagcgtgaaaggaatgctgccctggcaacagcttagcggcatagataacgcg
gtggagatcctctacaacgcctttcgcgaaggtacccgcattattgttgttggcgatttt
gacgccgacggcgcgaccagtactgcgctaagcgtattgggaatgcgtgcgttgggatgt
gacaacatcagttatctggtgcctaatcgctttgaggacggctacggtttaagcccggaa
gtggtcgatcaggcgaaggcgcgcggcgcacagcttatcgtcaccgtagacaacggcatt
tcatcccacgctggcgtagcgcatgcaaagacgttgaggattccggtgatcgtgaccgat
caccacctgcctggcgacacgttgccggatgccgaagcgattattaatcccaatctgcgc
gactgcgaattcccgtctaagtcgctggcgggcgtcggcgtggcgttttacctgatgctg
gcgttgcgaacatttttgcgcgacaaaggatggttcgacgagcgcggcatcgcgccgccg
aatctggcggagctgctggatttagtggcgttgggaacggtagcagacgttgtgccgctg
gacgccaacaaccgtattctgacctggcaagggctaagtcgtattcgtgccgggaaatgc
cgtccgggaattaaagcgttgctggagatatcgaatcgcgatccgcagcagcttgccgcc
agtgatttaggcttcgcgttggggcctcgtctgaatgccgccggcaggctggatgatatg
tccgttggcgtggcgttactgttgtgcgacaacctcggcgaagcgcgtgttctggccagc
gagctggatgcgcttaaccagacgcgcaaagaaatagagcaggggatgcaggcggaagcg
cttatcctgtgcgaaaagcttgagcgcagtagtgaaacgcttccgggcggtctggcgatg
tatcatcctgaatggcatcagggcgtggtcggaattctggcgtcgcgcattaaagagcgt
tttcaccgcccggtgatcgcctttgcacctgcgggcgacggcacgctaaaaggctcaggc
cgttcgattcaggggttgcatatgcgcgatgcgctggaaaggctggatacgctttaccct
gatctgatgatcaagttcggcggtcatgcgatggcggcgggattgtcgctggaagagcat
aaattcgagcagtttcagcaacgttttggcgagctggtgacggaatggctcgatcctgcc
ctgttgcaaggcgaggtgatctccgatggtccattaagcgcggcggagatgtctatggaa
gtggcgcaactgttgcgggatgccggaccgtgggggcaaatgttcccggaaccgttattc
gatggtcgtttccgtctgctacaacagcgtctggtgggcgagcgccacctcaaggtgatg
gtggagcctgtcggcggcggcccgctgttggatggcatcgcatttaatattgatacgacc
tgttggccggataacggcgtgcgggaggtagaactggcttataaactggacattaacgag
tttcgcggcaaccgtagtttacagattattatcgatgatatttggccgctatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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