KEGG   Sulfitobacter alexandrii: BOO69_09185
Entry
BOO69_09185       CDS       T04555                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
suam  Sulfitobacter alexandrii
Pathway
suam03030  DNA replication
suam03410  Base excision repair
suam03420  Nucleotide excision repair
suam03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:suam00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BOO69_09185
   03410 Base excision repair
    BOO69_09185
   03420 Nucleotide excision repair
    BOO69_09185
   03430 Mismatch repair
    BOO69_09185
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:suam03032]
    BOO69_09185
   03400 DNA repair and recombination proteins [BR:suam03400]
    BOO69_09185
Enzymes [BR:suam01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BOO69_09185
DNA replication proteins [BR:suam03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BOO69_09185
DNA repair and recombination proteins [BR:suam03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BOO69_09185
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BOO69_09185
   MMR (mismatch excision repair)
    DNA ligase
     BOO69_09185
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BOO69_09185
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 DNA_ligase_ZBD PTCB-BRCT
Other DBs
NCBI-ProteinID: APE43565
UniProt: A0A1J0WGV8
Position
complement(1885508..1887622)
AA seq 704 aa
MASDIETLTEDEAREALAELARALADANTAYHGEDAPQMSDADYDRLKQRNARIEARFPH
LKREDSPSDRVGAAPAEGFSKVTHAVAMLSLSNVFDDEEVTEFDARVRKYLGLGASDPLR
YTAEPKIDGLSLSLRYEGGRLVQAATRGDGAVGENVTANARTIDDIPVTLEGAPDLLEVR
GEVYMSHADFEALNDRQAEAGAKTFANPRNAAAGSLRQLDSAITKARPLRFFAYAWGALS
APLADTQMGGIDRLEKLGFATNPLTRLCDGPEEMLAHYALIEEQRATLGYDIDGVVYKVD
DLALQDRLGYRSTTPRWATAHKFPAELAWTRLEAIDIQVGRTGALSPVARLHPVTVGGVV
VSNATLHNEDYIRGLDSKGGEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLSKRPKDSAP
FTFPDTCPECGSDAVREPGDAVRRCTGGLICPAQAVEKLKHFVSRAAFDIEGLGAKQVEQ
FYADGWIAEPADIFTLKARYGSGVQQLKNREGWGEKSAGNLFQAIEDKREIPFGRLLFSL
GIRHVGESASNLIALHYGNWPVFVQAMDAAADRTGAAWEDLIGIDGVGTVMAGSLVKTFA
QERERASIDRLVDHLDVKEAKRADTTGSPVAGKTVVFTGTLEKMTRAEAKARAERLGAKV
AGSVSAKTDILVAGPGAGSKAKKAAELGVETLDEDGWLTLIGAS
NT seq 2115 nt   +upstreamnt  +downstreamnt
ttggcatccgacatcgagacactgacggaagacgaggcgcgcgaggcgcttgcggagctg
gcccgcgccctggccgatgccaacacggcataccacggcgaggacgcgccgcagatgtcc
gacgccgactacgatcgcctcaagcagcgcaacgcccggatcgaggcgcgctttccccat
ctgaaacgcgaggacagcccgtccgaccgggtgggagccgccccggcggaaggcttttcc
aaggtcacccatgcggtggcgatgctgtcgctctcgaacgtgttcgacgacgaagaggtc
acggagtttgacgcgagggtccgcaagtatctcggcctgggggcttccgaccccctgcgc
tacaccgctgagcccaagatcgacgggctgtcgctgtccctgcgctacgaggggggcagg
ctggtgcaggcggcgacccgcggcgacggtgccgtgggcgagaacgtgaccgccaacgcg
cgcaccatcgacgacatccccgtgaccctcgaaggcgcacccgacctgctcgaggtgcgc
ggtgaggtctacatgagccacgcggatttcgaggcgctgaacgacaggcaggcggaggcc
ggggccaagacctttgccaacccgcgcaatgccgccgcaggatcgctccgccaactggac
tccgccatcaccaaggcgcgtccgctgcggttcttcgcctatgcctggggcgcgctgagt
gccccgctggccgatacgcagatgggcggaatcgaccggctggaaaagttgggctttgcc
accaatccgctgacccggctgtgcgacgggcccgaggaaatgctggcgcactatgccttg
atcgaggaacagcgcgcgacactgggttacgacatcgatggcgtggtctacaaggtcgac
gacctggcgctgcaggaccggctgggctatcgttcgaccacgccccgctgggccaccgcg
cacaagttccccgcagagctggcctggacccggctcgaagccatcgacatacaggtgggc
cggacgggcgccctgtctccggtggcgcggttgcatccggtcacggtcggaggggtggtc
gtgtcgaacgcgactctgcacaacgaagactacatccgcgggctcgacagcaagggcggc
gaaatccgcggcggcaaggacatccgtgtgggcgactgggtgcaggtctatcgggcgggc
gacgttatccccaaggtcgccgacgtcgatctgtccaagcgcccgaaggacagcgcgcca
ttcacgtttccggacacctgccccgaatgcgggtccgatgccgtgcgcgaacccggcgat
gcggtgcggcgctgcactggcggcctgatctgccccgcgcaggcggtcgagaagctgaag
catttcgtttcccgcgcggcctttgacatcgaaggtctgggcgcgaaacaggtggagcag
ttctatgccgacggctggatcgcggagccggccgacatcttcacgctcaaggcgcgctac
ggctccggtgtgcaacagctcaagaaccgtgaaggctggggcgagaaatcggccggcaac
ctgttccaggcgatcgaggacaagcgcgaaattcccttcggcaggctccttttttccctc
ggaattcggcatgtcggcgaatccgcgtccaacctgatcgcgctgcattacggcaactgg
ccggttttcgtgcaggcgatggatgcagccgccgaccggaccggcgccgcctgggaagac
ctgatcggcattgatggcgtgggaactgtcatggccggatcactggtcaagaccttcgcg
caagagcgcgagcgcgcctcgatcgaccgtctggtggaccatctcgacgtgaaggaggca
aagcgcgccgacaccaccggcagcccggtcgcgggcaagacggtggtctttaccgggacg
ctcgaaaagatgacccgcgccgaagccaaggcccgcgccgaaaggctgggcgccaaggtg
gccggatcggtcagcgccaagacggatatcctcgtcgccgggcccggcgccggatccaag
gcgaagaaggcggcggaactgggtgtcgaaacgctcgacgaggacgggtggctgacgctg
atcggcgcttcatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (69)   
   KEGG ORTHOLOGY (1)   
   RefGene (66)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (92)   

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