KEGG   Stigmatella aurantiaca: STAUR_2718
Entry
STAUR_2718        CDS       T01425                                 
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
sur  Stigmatella aurantiaca
Pathway
sur03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sur00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    STAUR_2718
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sur03019]
    STAUR_2718
   03400 DNA repair and recombination proteins [BR:sur03400]
    STAUR_2718
Enzymes [BR:sur01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     STAUR_2718
Messenger RNA biogenesis [BR:sur03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     STAUR_2718
DNA repair and recombination proteins [BR:sur03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      STAUR_2718
SSDB
Motif
Pfam: DEAD Helicase_C HRDC RecQ_Zn_bind ResIII DprA_WH HTH_Crp_2 HTH_20
Other DBs
NCBI-ProteinID: ADO70516
UniProt: E3FKZ8
Position
complement(3302233..3304266)
AA seq 677 aa
MRRMLPEDLPHFVEAQEGLVRHFGLSEFRPGQAEVISSVLSKRNTLVVMPTGAGKSLCYQ
LPALLLPGLTLVVSPLIALMKDQVEQLTARSIPATFINSSLSDLERAERMRRLRAREYRL
LYVAPERLRSTGFLDTLGEVGVDLLAVDEAHCISQWGHDFRPDYAQLGQIRKRLRPPRTM
ALTATATPEVRDDIIRVLLMKDTQVFAQGFDRPNLFLEVMSVSGDEEKRQGCAQLAAQGG
SGIIYCATRKAAEGMHAALMGRGVNAFLYHAGMEDEARRRAQEDFMSSKEAVAVATNAFG
MGIDKPDIRFVAHANIPRAVEAYYQEIGRAGRDGQPATAVLLFNHADVYTQERLIEGNHP
SDVVLGDIWNVLRHVPEFDKGVGVLAGMVGASEFEVSAALRIFEREGKVERGSRGEGEYG
LTLTDKAATAHPHAADAQRLLQSLLATFPSGRSVTTELSVLSRRTGLPLDEVRHALGLLE
KAGVVTVRRPFSGRTIRALEAVSFQELGVDLSRLREQERRSLLLLKRMTDYAYTKRCRRA
FILGYFGQSDVEANCGHCDVCTGARMARLAPLSRQAATTGRPENYSELAATELRRWRKAL
AKDLEIPPFIIFNDATLLGLAAALPTDRSTFLAVKGTGESRWERFGTKVVEICLMARAAG
HEPVAVTEAARGRRRRE
NT seq 2034 nt   +upstreamnt  +downstreamnt
atgcggcggatgctgccggaggatctgccccatttcgtggaagcccaggaaggactggtc
cgtcacttcggcctgtccgagttccggccggggcaggccgaggtcatcagctcggtgctc
agcaagcgcaacaccctggtggtgatgcccacgggggcaggcaagagcctgtgctaccag
ctgcccgccctgctgctgccggggttgacgctcgtggtctccccgctcatcgcgctgatg
aaggaccaagtggagcagctcaccgcgcggagcatccccgccaccttcatcaactcctcc
ctttcggacctggagcgggcggagcggatgaggcggctgcgcgcccgggagtaccgcctc
ctctatgtggcgcccgagcgcctgcgcagcacgggcttcctggacaccctgggcgaggtg
ggcgtcgacctgctggccgtggacgaggcgcactgcatctcccagtggggccacgacttc
cggccggactacgcgcagctcgggcagatccgcaagcgcctgcgtcccccgaggacgatg
gccctcaccgccacggccacccccgaggtgcgggacgacatcatccgcgtgctgctgatg
aaggacacgcaggtgttcgcccaaggcttcgaccggcccaacctcttcctggaggtgatg
agcgtcagcggggacgaggagaagcggcaggggtgcgcccagctcgccgcccagggcggc
agtggcatcatttattgcgccacgcgcaaggccgccgagggcatgcacgcggcgctgatg
ggccggggcgtgaacgcctttttgtaccacgcgggcatggaggatgaggcgcggcgccgc
gcgcaggaggacttcatgtcgtccaaggaggcggtggcggtggccaccaatgccttcggc
atgggcatcgacaagccggacatccgcttcgtggcgcacgccaacatcccccgggcggtg
gaggcgtactaccaggagatcgggcgcgcgggccgggatggccagcccgccacggcggtg
ctgctcttcaaccacgcggacgtgtacacccaggagcggctcatcgagggcaatcaccca
tcggacgtggtgctgggggacatctggaacgtcctgcgccacgtgcccgagttcgacaag
ggcgtgggggtgctcgcgggcatggtgggcgccagcgagttcgaggtctccgcggccctg
cgcatcttcgagcgcgagggcaaggtggagcgcggcagccggggagaaggcgagtatggc
ctgacgctcacggacaaggccgccaccgcccacccgcatgcggcggatgcccagcggctg
ctccagtcgctgctggccaccttcccgtccggccgctccgtgacgacggagctgtcggtg
ctctcccggcgcaccgggctgccgctggacgaggtgcggcacgccctggggttgctggag
aaggcgggcgtggtgacggtgcgccggcccttctccgggcgcaccatccgggccctggag
gccgtgtccttccaggagttgggcgtggacttgagccggctgagagagcaagagcggcga
tccctgctgctcctcaagcggatgacggactacgcgtacacgaagcggtgccgacgggcc
ttcatcctgggctacttcgggcagagcgacgtggaggcgaactgtggccactgcgacgtg
tgcacgggggcccggatggcccggttggcccccctgtcccggcaagccgccaccaccggg
cggcccgagaactacagcgagctggccgccacggagctgaggcgctggcgcaaggcgctg
gccaaggatctggagataccgcccttcatcatcttcaatgatgcgacgctcctggggctg
gcggcggccctgcccacggaccggagcacctttctcgcggtgaagggcacgggcgagagc
cgctgggagcgcttcggcaccaaggtggtggagatctgcctgatggcccgcgcggccgga
catgagcccgtggccgtgaccgaggcggcccgagggcgcaggcgcagggagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (30)   

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