KEGG T00412: Acid

Candidatus Solibacter usitatus: Acid_7844

Entry

Acid_7844 CDS T00412

Definition

ATP dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

sus Candidatus Solibacter usitatus

Pathway

sus03410	Base excision repair
sus03420	Nucleotide excision repair
sus03430	Mismatch repair
sus03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:sus03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:sus03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:sus03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:sus03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

9839542..9841434

AA seq 630 aa
MPAEMPASIEPMKATIAERVPRGDEWLFEIKWDGVRAVAFLDNEEVRLQARSGLRCERQY
PELAVLPHHVAAARAILDGEIAVLDAKGVSQFHLIQPRIANSDPNTIAHLVRSTPVVYFA
FDLLYLDGYDLRNVDLAKRRELLERVLTPGAQVRVSDVFPGAGEALLEAARENGLEGIIA
KHPRSCYESRRSREWLKIKIVTEQEFVIGGFTEPQGDRQYFGALVLGVQKAGALRWVGNV
GTGFDQKLLASLYARLEPLITTKCPFVERPKPDRGMTWVRPELVCQVKYGNWTPDDRLRA
PVFIGLRNDKPVVEVEKETTGELLPKSKEATLPIDGRTLKFTNLSKLYYPDDGVSKRDVI
NYYDSVADLILPHLRDRPLSLKRYPNGIKEDFFFQKNTPETYPAWMRTELIDSDHAGAIN
YVFADDRASLLYLVNLGCIDQNPWISRSGSLDNPDFVLIDLDPQECAYDLIVEAAVMVKE
ILDRIGLKGYPKTTGGDGMHVYIPVEAVYSYEETRIFAELIARLVTQRKPQMYTTPRSVS
KRQKNRVYFDYLQNGKSKTIAAPYVLRAYPGAPVATPLEWSEVKPGLDPKQFHIGNARER
FRKKGDLFRGVLDAPQNLYDALGKLEKLFR

NT seq 1893 nt +upstreamnt +downstreamnt
atgcctgcggaaatgccggcgtcgatcgagccgatgaaggcgacgattgccgagcgcgtg
ccgcgtggggacgagtggctgttcgagattaaatgggatggggtgcgagcggtcgctttt
ttggataacgaagaagtgcggctgcaggcgcggagcggattgcgctgcgagcggcaatac
ccggagctggcggtgctgccgcatcacgtggccgcggcgcgcgcgattctggacggcgaa
atcgcggtgctggatgccaaaggcgtttcccagtttcatttgattcagccgcgcatcgcg
aatagcgatccgaatacgattgcccatctggtgcgctccacgccggtggtgtatttcgcg
ttcgacctgctctacctggatggctacgatctgcgcaacgtggacctggcgaagcgtcgc
gaactgttggagcgagtgctgacgccgggagcgcaagtacgagtctccgatgtgtttccc
ggcgcgggagaggccctgctggaagcggcacgggagaacgggctcgagggcatcatcgcc
aagcatccgcggagctgctacgaatccaggcgaagccgcgagtggctaaagatcaagatt
gtcaccgagcaggaattcgtgatcggcgggttcacggaaccccaaggcgaccggcagtac
ttcggcgcgcttgtgctgggggtgcaaaaggcgggcgccctgcgctgggtcggcaatgtg
ggcacgggcttcgatcaaaagctgctggcgagcctatacgcgcggctcgagccactgatc
accactaagtgcccgttcgtcgagcggcccaagccggatcgagggatgacgtgggtaagg
ccggagctggtatgccaggtgaaatacggcaactggaccccggacgaccggctgcgcgca
ccggtcttcatcgggctgcgcaacgacaagcccgtggtggaggtggagaaagagacgacg
ggtgaactgcttccgaagagcaaggaggcgacgctaccgatcgacgggcgcacgctcaag
ttcacgaatctctctaagctgtattaccccgacgatggggtcagcaagcgggacgtgatc
aactactacgactcggtggcggatttgattctgccgcatctgagagaccggccgctttct
ctgaagcgatatccgaacggcatcaaggaggattttttcttccaaaagaatacgccggag
acgtatcctgcgtggatgcggacggagctgatcgacagcgaccacgcgggggcgatcaac
tacgtgttcgcggatgaccgggcaagcctgctgtacctggtgaatctgggatgcatcgac
cagaatccgtggatcagccggtcgggatcgctggacaatccggatttcgttctaatcgac
ctggatccgcaagagtgcgcatacgatttgattgtggaagcggcggtgatggtgaaggaa
attctagaccggatcgggctgaagggttatccgaagacaacaggcggggacgggatgcac
gtgtacattccggtggaagcggtgtacagctatgaggagacgcggatcttcgcggaactg
atcgcgcggctggtgacgcagcggaagccgcagatgtacacaacgccgcgctcggtgagc
aagcgacagaagaaccgggtgtatttcgattacttgcagaacgggaaatcgaagacgatc
gcggcgccgtatgtgctgcgggcgtaccctggggccccggtggcaactccgctggagtgg
agcgaggttaagcccgggctggacccgaagcagtttcacatcgggaatgcacgggagcgg
ttccggaagaagggcgatctgttccgtggagtgttggatgcgccgcagaatctttacgat
gcgctgggcaagctggagaagcttttccggtaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SUS (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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