KEGG T00980: Svir

Saccharomonospora viridis: Svir_34920

Entry

Svir_34920 CDS T00980

Definition

DNA ligase D/DNA polymerase LigD

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

svi Saccharomonospora viridis

Pathway

svi03410	Base excision repair
svi03420	Nucleotide excision repair
svi03430	Mismatch repair
svi03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:svi03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:svi03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:svi03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:svi03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C

Other DBs

NCBI-GI:

257057449

NCBI-GeneID:

8388814

UniProt:

C7MQ31

Position

3792932..3794365

AA seq 477 aa
MAPRLEQYRNKRRKGHTPEPIPSVTLASTEGHGDTFVVHEHHARNLHWDVRLERDGRLIS
FAVPKGLPTEPGTVRLAVRTEDHPLEYSTFSGEIPKGEYGGGHMSIWDRGTYETLKWGES
KVSIVLHGERVHGKYVFFRTRESDWSVVRSDPPDDPEWTPIPSLLKPMLAVTGSLPDPEE
DSDWAYEFKWDGVRALARVEGGRVTLFSRRGDDITGIYPELRALGEDLGSTQAWLDGEIV
AFRDGRPHFATLQGRINAGAQKARRLSQRSPVTYLVFDLLHLDGHSCMGLPYWQRRNLLE
QLDITGEHWRTPPSFPGAGRAVTEAAAEQRLEGVVAKRLDSPYRPGERSVDWRKITELRT
LEVVIGGWRQGRGRRSDTFGSLLLGIPNDGRLQYIGQVGTGFDEDALHALTSRLHRLERR
TSPFSEALPKDRTSGAHWVSPRLVGEVAFKSWTDDGRLRAPTWRGLRPDRDPEELAR

NT seq 1434 nt +upstreamnt +downstreamnt
atggcgccgcgactcgagcagtaccggaacaagcggaggaaaggacacacccccgaaccg
atacccagcgtaactctcgcgtcgacggagggccacggcgacacgttcgtcgtgcacgag
catcatgcccgcaatctgcactgggacgtgcgcctcgagcgcgacggcaggctgatctcg
ttcgcggtaccgaagggacttcccactgaaccgggcacagtgcgactcgccgtgcgcacc
gaggaccatccgctggagtactcgacgttctccggagagatcccgaaaggcgagtacggc
ggcggacacatgtcgatctgggaccgaggtacctatgagactctcaagtggggcgagagc
aaggtctcgatcgtcctgcacggtgaacgggtgcacggcaagtacgtgttcttccgcacc
cgggaaagtgattggagcgtcgtacgttccgatccaccagacgatccagagtggacccca
attccctccctcctcaaacccatgctcgccgtgacgggctccctgcccgaccccgaggag
gactccgactgggcatacgagttcaaatgggacggtgtacgcgccctcgcccgggtcgaa
ggggggagagtcacgctgttctcccggcgaggcgacgacatcaccgggatctatccggaa
ttgcgtgcgctcggcgaggatttgggaagcacccaggcttggctggacggtgagatcgtg
gcgttccgagacggcagaccacacttcgccaccctgcaaggccgcatcaacgcgggagcg
cagaaggcccggaggttgtcccagcgctccccggtcacgtatctcgtgttcgacctgctg
cacctcgacggccattcctgcatgggactgccctactggcagcggaggaacctgctggag
cagctcgacatcacgggtgaacattggcgaacccctcccagcttccccggggccggtcga
gcggtcacggaggccgctgccgaacaacgactggaaggggtcgtcgccaagcgcctcgac
tccccctaccgccccggggaacgcagcgtcgactggcgcaagatcaccgaactgcggacg
ttggaggtggtcatcggcggctggcggcaaggccggggaagacgctccgacaccttcggc
tcgctcctgctgggcatccctaacgacggtcggcttcagtacatcggccaggtcggaacc
ggattcgacgaggacgccctgcacgccctcacctccagactgcaccggctggaacgccgg
acctcgccgttctccgaagccttaccgaaagaccggacgagcggagctcactgggtcagt
ccgcgactcgtgggcgaggtcgcgttcaagtcgtggaccgacgacggccgactgcgcgca
ccgacgtggcgggggctgcgccccgaccgcgatccggaggagttggcgcgatga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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