KEGG T01602: Strvi

Streptomyces violaceusniger: Strvi_0343

Entry

Strvi_0343 CDS T01602

Definition

DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

svl Streptomyces violaceusniger

Pathway

svl03410	Base excision repair
svl03420	Nucleotide excision repair
svl03430	Mismatch repair
svl03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:svl03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:svl03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:svl03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:svl03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C

Other DBs

NCBI-GI:

345008057

NCBI-GeneID:

11088841

UniProt:

G2PB79

Position

complement(112748..114286)

AA seq 512 aa
MLLADVALTSRQVAATSARSEKIAALARLFRRTEPAEAAVVITYLAGKLPQRRTGVGWST
LRHRQEPAAEPTLAVLDVDEALTRVAAVSGTGATAARKRLVGELLAAATKEEQGFLLGLI
GGELRQGALEGLAVEGLAQAVGAPAAEVRRAVMVGGSLGTVAEALLARGPEALAGFRLEV
GRPVLPMLAQSAKDLDEAIDRLGPCAVEEKLDGIRVQVHRDGEDVRIYTRTLDEITDRLP
EVVTAARELAVDRAILDGEVILLDGEGRPRPFQETSARVGSRLDVAGASAALPLSPVFFD
LLVVDDRDLLDLPARERHAELARIAPGPRRVRRLVTDDPADPETRRAAREFAADVLARGH
EGVLVKALEAPYGAGRRGASWLKVKPVHTLDLVVLAAEWGHGRRTGKLSNLHLGARAADG
TYLMLGKTFKGLTDAMLEWQTQALLGIAVSDDGWVVRVRPELVVEVAFDGLQRSSRYPAG
VTLRFARVLRYREDKPADQADTVEAVLALRGE

NT seq 1539 nt +upstreamnt +downstreamnt
atgctgctggctgatgtcgcgctgacctcccgccaggtcgcggccacctccgcccgctcg
gagaagatcgccgcactggcccggctgttccggcgtacggaaccggccgaggcggccgtg
gtgatcacctacctggcgggcaaactgccccagcgccggaccggagtgggctggtccacc
ctgcgccaccggcaggaacccgccgccgagccgacgctcgcggtgctcgatgtggacgag
gccctcacccgggtcgcggcggtctccggcaccggcgcgacggcggcccgcaagcggctg
gtgggcgagctgctggccgccgcgaccaaggaggagcagggctttctgctcgggctgatc
ggcggggagctgcggcagggggccctggaagggctggccgtcgaggggctcgcccaggcc
gtgggcgcaccggccgccgaggtgcggcgggcggtgatggtcggcggttcgctgggcacc
gtcgccgaggcgctgctggcgcgcggcccggaggcgctggccggcttccggctcgaagtg
gggcggccggtgctgccgatgctcgcgcagagcgccaaggacctcgacgaggccatcgac
cggctgggaccgtgcgcggtcgaggagaagctggacgggatccgggtccaggtgcaccgg
gacggcgaggacgtacggatctacacccgcaccctcgacgagatcaccgaccggctgccg
gaggtcgtcacggcggcacgggaactggcggtggaccgggcgatcctcgacggtgaggtg
atcctgctggacggcgaggggcggccacggccgttccaggagacctccgcccgggtcggc
tcccggctcgatgtggccggggcgtcggccgcgctgccgctgtcccccgtcttcttcgat
ctgctcgtcgtggacgaccgcgatctgctcgacctgccggcccgcgagcgccatgccgaa
ctcgcccggatcgcccccgggccccggcgggtgcggcggctggtgaccgacgacccggcg
gatccggaaacccggcgggcggcacgggagttcgccgccgacgtgctggcccgggggcat
gagggggtgctggtcaaggcgctggaggcgccgtacggcgcgggccggcgcggggcgtcc
tggctgaaggtcaaaccggtgcacacgctggacctggtggtgctggcggcggagtgggga
cacggccgccgcaccgggaagctgtccaacctgcacctgggcgcgcgagcggcggacggc
acgtatctgatgctgggcaagaccttcaaggggctcaccgacgcgatgctggagtggcag
acgcaggcgctgctggggatcgcggtcagcgacgacggctgggtggtgcgggtgcggccg
gagctggtggtggaggtggccttcgacgggctgcagcgctcgtcccgctatccggcgggc
gtcacactgcggttcgcgcgggtgctgcgctaccgggaggacaagccggcggatcaggcg
gacacggtcgaggcggtgctggcgctgcgcggcgagtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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