KEGG   Shewanella violacea: SVI_0113Help
Entry
SVI_0113          CDS       T01206                                 

Gene name
mutM
Definition
(GenBank) formamidopyrimidine-DNA glycosylase
  KO
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
svo  Shewanella violacea
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:svo00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    SVI_0113 (mutM)
Enzymes [BR:svo01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     SVI_0113 (mutM)
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     SVI_0113 (mutM)
DNA repair and recombination proteins [BR:svo03400]
 Prokaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     SVI_0113 (mutM)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
Position
complement(130293..131108)
Genome map
AA seq 271 aa AA seqDB search
MPELPEVEVTRQGISPHLVGQQVIGLVVRNASLRWPVPQIAQQIVGQVIRNVRRRAKYLL
IDTDAGTTIVHLGMSGSLRIVPRSTQVEKHDHIDLELASGKILRFNDPRRFGAWLWCELP
EEAHPLLSKLGPEPLKDNFTPKYLFDSLRNKKKAIKLCLMDNHIVVGVGNIYANEALFAA
GIHPQTEAGRLDIERLTILVTQVKQILASAIKQGGTTLKDFTNADGKPGYFAQKLHVYGR
GGDTCTQCGNLLSEIKLGQRATVFCGICQTR
NT seq 816 nt NT seq  +upstreamnt  +downstreamnt
atgcccgaactgcccgaagttgaagtaacccgccaaggaatcagcccacatctagtcggc
cagcaagtcatcggcttagtggtacgcaatgccagtctgcgctggccagtgcctcaaata
gcccagcagatagtcggccaggtgatacgcaatgtacggcgccgggcgaaatacttgctt
atcgacaccgatgccggcactaccatagtgcacttaggcatgtcaggcagtttacgcata
gtgccccgcagcactcaagtagagaagcatgaccatatagatctcgaacttgccagcggt
aagatattgaggtttaacgaccctcgccgtttcggggcctggctctggtgtgaactgccg
gaagaagctcatcctctgttatcaaaattaggacctgagccactcaaagataactttact
cccaagtatttatttgactccctaaggaacaagaagaaagccataaagctctgcctgatg
gataatcatatcgtggttggtgtgggtaatatttacgctaatgaggcgctatttgcagcg
gggatccatcctcagaccgaagcaggaagactggatatcgaacgcttgaccatcttagta
acccaagttaaacagatactagccagtgccatcaagcaaggtggtactaccttgaaagac
ttcactaatgccgatggtaaaccaggttatttcgctcagaaactgcatgtctatggccgc
ggtggcgacacttgtactcaatgtggcaatctactcagcgagataaagctgggacaaaga
gctacggtattttgtggcatatgccagacgagatag

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