KEGG   Shewanella violacea: SVI_0485
Entry
SVI_0485          CDS       T01206                                 
Symbol
hfq
Name
(GenBank) host factor-I protein
  KO
K03666  host factor-I protein
Organism
svo  Shewanella violacea
Pathway
svo02024  Quorum sensing
svo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:svo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SVI_0485 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    SVI_0485 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:svo03019]
    SVI_0485 (hfq)
   03036 Chromosome and associated proteins [BR:svo03036]
    SVI_0485 (hfq)
Messenger RNA biogenesis [BR:svo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     SVI_0485 (hfq)
Chromosome and associated proteins [BR:svo03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    SVI_0485 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: BAJ00456
UniProt: D4ZFK7
Position
553509..553787
AA seq 92 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQVESFDQFVILLKNTVSQMVYKHAIS
TVVPARPFSVNSHHATPTQAAGLNGQQDEVSE
NT seq 279 nt   +upstreamnt  +downstreamnt
atggcaaaggggcaatctttacaagacccatttttgaacgcacttcgccgtgagcgcgtt
cctgtatcaatttatcttgttaatggtattaaattacaaggacaagttgagtcatttgac
cagtttgtcatcttgcttaagaacacggttagccaaatggtatataagcacgctatctct
acagtcgtgcctgcgcgtccattcagtgtaaacagccatcacgcgaccccaactcaagct
gcaggccttaatggtcagcaggatgaagtgagcgagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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