KEGG   Shewanella woodyi: Swoo_0078Help
Entry
Swoo_0078         CDS       T00676                                 

Definition
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
swd  Shewanella woodyi
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:swd00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    Swoo_0078
Enzymes [BR:swd01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Swoo_0078
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Swoo_0078
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
JGI: 
UniProt: 
Position
complement(94604..95419)
Genome map
AA seq 271 aa AA seqDB search
MPELPEVEVTRQGVSPYLIDQEVTGLTVRNASLRWPVPDLAQQIVGQTIRSVHRRAKYLL
IDTDAGTTIVHLGMSGSLRVVTELTPVEKHDHIDLSLASGKILRFNDPRRFGAWLWYELP
IDAHPLLSKLGPEPLTDAFNPSYLFESLKGKKKAIKLCLMDNHIVVGVGNIYANEALFAA
GIHPQMEAGKVDQERLIILVSEVKQILANAIKQGGTTLKDFTNAEGKPGYFAQKLHVYGR
GGESCTQCGNLLSEIKLGQRATVFCGLCQTR
NT seq 816 nt NT seq  +upstreamnt  +downstreamnt
atgccagaacttccggaagttgaggtcacccgtcaaggggtctcaccctatctgattgac
caagaggtcacaggccttaccgtacgtaacgccagcttgcgttggcccgtccctgatttg
gcgcagcagattgtcggtcaaaccatacgtagtgtgcatcgccgcgctaaatatctgctt
attgataccgatgcaggtacgacaattgtgcatctaggtatgtctggcagcttaagggtg
gtgacagagctcactccggttgagaagcatgaccatatcgatttaagcttggccagtggc
aagatactgcgctttaacgacccgaggcgctttggtgcttggttatggtatgagctgccc
attgatgcacaccccctactgtctaaacttgggcccgaacctttaactgatgcattcaat
ccaagctatctgtttgaatcgttaaaagggaagaaaaaagcgataaagctctgtctgatg
gataaccatatcgtggttggtgtaggcaatatctacgctaacgaggctctctttgcagcg
ggaatacatccacaaatggaagcgggtaaggtagatcaagagcgcttgattatcttagtt
tcagaggtgaaacagatcttagccaatgcgataaaacaggggggaaccaccctaaaagac
tttaccaacgccgaaggcaagcctggctactttgcccagaagcttcacgtttatggccgc
ggaggagagagctgtactcagtgtggtaacctgctcagtgagattaagttaggccagaga
gccactgtattctgtggcttgtgccaaacgagataa

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