KEGG   Shewanella woodyi: Swoo_0897
Entry
Swoo_0897         CDS       T00676                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
swd  Shewanella woodyi
Pathway
swd03410  Base excision repair
swd03430  Mismatch repair
swd03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:swd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Swoo_0897
   03430 Mismatch repair
    Swoo_0897
   03440 Homologous recombination
    Swoo_0897
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:swd03400]
    Swoo_0897
DNA repair and recombination proteins [BR:swd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     Swoo_0897
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     Swoo_0897
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Swoo_0897
SSDB
Motif
Pfam: DHH DHHA1 RecJ_OB
Other DBs
NCBI-ProteinID: ACA85191
UniProt: B1KF40
Position
1195380..1197104
AA seq 574 aa
MIHKIVRRPRVDDTHLPETLSPLLKQIYASRGSTAADCDLALKRLLRPDTMMGLPRAAEI
IADAIMAQRSILIMGDFDADGATSTCVCLLALKMMGATRVDYLIPNRFDFGYGLSPEIVA
VAQDKGAELLITVDNGISSIEGVEAAKSLGMQVVITDHHLPGKTIPNADAIVNPNQVDCS
FASKSIAGVGVAFYLMSALRAELRSRNWYQEQGIAEPNLAQLLDIVALGTVADVVALDGN
NRILVEAGLQRVRAGRCRPGITALLEVAKRNPSRIVASDFGFAVGPRLNAAGRLDEMSLG
VETLLCDDMMTARRMASELDGLNAERRDLEADMQQEALKSLEKLELNEAELPWGIALFKE
DWHQGVIGILASRIKDRYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELINSRHPGMI
LKFGGHAMAAGLSLLEKDFYKFEQAYDEGVRELLKPEQLTGEMTTDGELTPDEMTLPMAW
ELRNAGPWGQEFPEPLFDGYFKVVQQRIVGEKHLKLVLETECGKLMLDGIAFNVDMTTWP
DATIEHARVVYKLDVNEFRGNQTLQLMVDQIEAM
NT seq 1725 nt   +upstreamnt  +downstreamnt
gtgatccataagattgttcgccgccctagagtcgatgatactcaccttcccgaaaccctc
tctccactcctaaagcagatatatgccagtcgtggcagcacggcggcagattgtgatttg
gccctaaagcggttacttcgccccgataccatgatgggattgcctcgtgcggcagagatc
attgcggatgccattatggctcagcgctctattctgatcatgggggattttgatgccgat
ggtgcaacttccacttgtgtgtgtttacttgcacttaagatgatgggggcgacgcgggtc
gactacctgatcccaaatcgatttgattttggttacggcttaagtcccgagatagtcgct
gtagcacaggataagggcgccgagttactgatcaccgtcgataatggcatctcctcaatt
gagggggtagaagcggcgaaatctctggggatgcaagtggttatcaccgaccatcacctt
cctgggaaaaccattcccaacgccgatgctatcgtcaacccaaaccaagtcgattgcagc
tttgctagtaaatcaattgcaggggttggggttgccttctatcttatgtccgcgttaaga
gcagagttaagatcgcgtaactggtatcaagagcaggggatcgctgagccaaatttagct
cagttactggatattgttgccttaggtacagtggctgatgtggttgcattagatggcaat
aaccgaatcttagtcgaagctgggttgcaacgggttcgcgcaggaaggtgtcgacctggg
atcacggcattgttagaggtggctaagcgtaatccatctagaatcgtggcttctgatttt
ggctttgcggttgggcctaggttaaatgcggcgggccgactcgatgagatgtcattgggg
gtcgaaaccctattatgtgatgacatgatgactgccagacgtatggcgtcagagctagat
ggcctgaacgctgagcgacgggatcttgaagctgatatgcagcaggaagctttaaagagt
ttagagaaattagagcttaatgaagctgagcttccttgggggatagccctgtttaaggag
gattggcaccaaggagtcataggaattttagcctcgcgcattaaggacaggtatcatcga
cctgttattgcgtttgccgatgcgggcaatggagagataaagggctctgcacgttcgatt
aaaggtctgcatatgcgggatctgttagagctgattaatagcagacaccctgggatgatc
cttaagtttggtggtcatgccatggcagctggcctctccctgttagagaaagacttttat
aagtttgaacaggcttatgatgaaggggtaagagagctgctaaagcctgagcagttaacc
ggtgagatgaccaccgatggcgagctgacacccgatgagatgaccttacctatggcttgg
gagctaaggaatgcaggcccatggggccaagagttccctgagcctctgtttgatggttat
tttaaagtggtgcagcagcgtatcgttggtgagaagcacctcaagcttgtactggaaacc
gagtgtggcaagcttatgcttgacggtatcgcctttaacgtcgatatgaccacttggccg
gatgccaccattgagcatgctcgtgttgtgtataagctcgatgttaacgagtttaggggt
aatcaaacattgcagttgatggtagatcaaatagaggcaatgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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