KEGG   Shewanella woodyi: Swoo_1743
Entry
Swoo_1743         CDS       T00676                                 
Name
(GenBank) transcriptional regulator, AraC family
  KO
K13529  AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
Organism
swd  Shewanella woodyi
Pathway
swd03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:swd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Swoo_1743
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:swd03000]
    Swoo_1743
   03400 DNA repair and recombination proteins [BR:swd03400]
    Swoo_1743
Enzymes [BR:swd01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.21  DNA-3-methyladenine glycosylase II
     Swoo_1743
Transcription factors [BR:swd03000]
 Prokaryotic type
  Helix-turn-helix
   AraC family
    Swoo_1743
DNA repair and recombination proteins [BR:swd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     Swoo_1743
SSDB
Motif
Pfam: AlkA_N Ada_Zn_binding HTH_18 HTH_AraC HhH-GPD DUF6233
Other DBs
NCBI-ProteinID: ACA86028
UniProt: B1KNF1
Position
2167032..2168537
AA seq 501 aa
MCSEAEGVLTNESCRRARLARDPRFDGVFFIGVLTTGIFCRSICPATPPKEKNVRYFSTA
IEAANAGLRPCLRCRPDSAPGSFAWKGTDTTVERALSLIDDGFLFGDSPGSLESLAQKLG
ITSRYLRKLFADKVGTSPNKYAQFRQLMFAKQLLHQTDLSMTQVGLAAGFTSIRRFNEVF
QQTLALTPSALRKSRGSRQSELSHEGSEIRLSMQFSYRPPLNWQKQLDFYRLRMVEGMEW
EADLEGYSRSFQLGDVKGFFEAKHDEVKHRFNVIIHLVDPQALPVLSEVVAQIKRVLDLD
ADMFQIQTSLSSIGIIKNSIVDGLRLPGTWSAFEAGCRAILGQQVSVVQATKLLNRLVEA
NGERLTISGREILLFPTPLAIANASLDELKMPGARKAALNAFGTFVSQHPDAPVDDWLNI
KGIGPWTVAYAKMRGLSDPNILLCSDLIVKKRVLKRYEALQSSETDLKANLDISYKTITQ
QLEQSISPWGSYLTFQLWNLE
NT seq 1506 nt   +upstreamnt  +downstreamnt
atgtgttctgaagccgagggagtattgacgaatgagtcttgtcgaagagcaaggttggcg
agagatcctcgttttgatggtgttttttttattggcgtactaacgacagggatcttttgc
cgctcaatttgcccggcaacaccgccaaaggagaagaatgttcgctacttttctacggcc
atagaggctgccaatgcagggcttaggccttgtttacgttgcaggcctgacagtgcacca
ggctcctttgcatggaaaggcactgatacgacggttgaacgtgctttatcattaatcgat
gacggctttctttttggtgatagccctggttcattagaatcattggcgcagaagctaggg
atcaccagccgatacttaagaaaactctttgccgacaaggtggggacatctccaaacaaa
tatgcacagtttcgccaattgatgtttgctaaacaactgttacatcagacagatctgtcg
atgacacaagttggactggcagctggatttactagtatcagacgctttaatgaagttttt
cagcaaacattagctttaaccccttccgccctgcgtaaaagccgcggctcgcgccaaagc
gaattgagccatgaagggagtgaaatacgattatctatgcagttctcctatcgaccaccg
cttaattggcaaaagcagctggatttttatcggttaagaatggtcgaagggatggagtgg
gaagctgacttagaaggctacagtcgcagctttcaacttggagatgtgaaaggttttttt
gaggctaagcatgatgaagtgaagcatagatttaatgtcattattcatctagtcgatccc
caagctttaccggtattgagtgaggtggtcgcgcaaataaagcgagtattggatctcgac
gctgatatgtttcaaatccaaacgagtctctcttcgattggaattattaaaaactcgatt
gtagatggcctaaggttgcctggtacctggtctgcatttgaagccggctgtagggcgatt
ctgggtcagcaggtgagtgtggttcaggccactaaattgctaaatcgattagtagaggca
aacggcgagcggcttactatttcaggaagagagattcttctatttccaactcctctagca
atagcgaacgcaagtttagatgagttaaaaatgccgggcgccagaaaagcagcccttaat
gcttttgggacgtttgttagtcaacaccctgacgcacctgtggatgactggcttaatatc
aaaggaataggaccatggacagtggcctatgcgaaaatgagaggtctaagcgatcctaat
attttactctgttcagatcttatcgttaagaaaagggtgcttaagcgatatgaggcgttg
cagagctctgagacagatttaaaggcaaatctagatatttcttacaaaacgatcacgcag
caattagagcaaagtatctctccttgggggagttacttaacttttcaattatggaattta
gaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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