KEGG   Shewanella woodyi: Swoo_1811
Entry
Swoo_1811         CDS       T00676                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
swd  Shewanella woodyi
Pathway
swd03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:swd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Swoo_1811
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:swd03400]
    Swoo_1811
Enzymes [BR:swd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Swoo_1811
DNA repair and recombination proteins [BR:swd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      Swoo_1811
SSDB
Motif
Pfam: UvrB_inter DEAD TRCF Helicase_C MFD_D3 CarD_TRCF_RID ResIII UB2H ERCC3_RAD25_C RecG_dom3_C
Other DBs
NCBI-ProteinID: ACA86095
UniProt: B1KNL8
Position
complement(2238671..2242144)
AA seq 1157 aa
MKAFSVLTPPHVKSATKAQTLFTLGGASQAITLANLVKDHEGLTLAVTSDTPTALLLESE
LNYLLQDDTLPVWLFPDRETLPYDSFSPHQDLVSQRLETLSQIPNAKRGVVIVPISTLMV
LLPPRSFLAGNVLMLAKGDNYCLQDVKQQLVDTGYHLVEQVYEHGEFAVRGSIIDLFPMG
STQPYRIELFDDEVESIRHFDPETQRSSSAIDSIRLLPAKEFPTDSAAIEGFRQRYRRHF
EVIVKEPESVYQMVSRKILPAGIENYLPLFFDETASLFDYLPAQTQLVNIGDLEAASRAH
LTEVELRYEDRRVDPLRPLLPPKSLYLLTEQLFSAFKKFPRTLLKIGENQDSGSNAKLES
LPELTANHKLKQPLTLLQDYATQGGRILFSAESEGRREALLELFAKIDLKPQVFEHLDDF
VDSKVKQGLIVSPLSKGAIIEKARGAKFSIICETELFGHRISQTRRRDKQRQISSDALIK
NLAELKVGQPIVHLDHGVAHYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVSSLHLISRY
SVGPDEEAQLNKLGNESWAKAKKKAIEKIRDVAVELLDVYARRQARPGDACHIDQEEYAL
FSNSFPFEETVDQETSINAVLTDMSSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQV
AILVPTTLLAQQHFENFKDRFADWPVKIEVMSRFKTAKEQKAVLEDLSNGKVDIVIGTHK
LLQSEAKFENLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRD
LSIIATPPAKRLAVKTFVREYDNAAIREALLREILRGGQVYFLHNTVETIEKRAAEISEL
LPEARVITAHGQMRERELEKVMSDFYHQRFNVLVCTTIIETGIDIPSANTIVIERADKFG
LAQLHQLRGRVGRSHHQAYAYLMTPHPKSMTKDARKRLEAIGALEDLGAGFMLATQDLEI
RGAGELLGDEQSGHISKIGFTLYMEMLEDAVKSLKEGKEPSLSQMLRRQCEIDLRIPALL
PEDFVHDVNIRLSLYKRIANCETSQALDELKVELIDRFGLLPDSTKNLMELTLYKHQATA
LGIKKIEMHAKGGSLEFSDDHSVDPGFIIGLLQSQPQNYRMDGPSKLKFIIPAESHADRL
ALVKLLLGQLSQHRLGD
NT seq 3474 nt   +upstreamnt  +downstreamnt
atgaaagcattttccgtattaacgccgccccatgttaaaagtgccaccaaagcacaaact
ctgttcacattaggcggcgcatcgcaggccatcaccttagctaatttagtcaaggatcat
gaggggctgacactggcagtcaccagtgataccccaactgcgcttctattagagagcgaa
ctaaattatcttcttcaggacgacactcttcctgtttggttgttccctgatagagaaacc
ttgccatacgatagtttctccccccatcaagatctggtttcacaacgtctggaaactctg
tcacagatcccgaatgctaaacggggagtagtgatagtccccatcagtactctgatggtt
cttctgccaccaagatcatttctagccggcaacgtattgatgttggctaaaggtgataac
tactgccttcaagatgttaaacagcaattggtggataccggttatcacctcgttgaacaa
gtttatgaacacggagagtttgctgtaagaggctcgattatcgatctgttcccaatgggc
tcaactcagccctatcgtatcgaactgtttgacgatgaagtggaatcgataagacatttt
gaccctgaaactcaacgttccagtagtgccatcgactcaattcgtttattgccagcaaaa
gagttccccacagacagtgcggctatcgaagggtttagacaaaggtaccgacgtcatttt
gaagtgatagtcaaagagccagaatctgtttatcagatggtgagccgcaaaatacttcca
gctgggattgagaactacctaccactttttttcgatgaaacggcaagcctatttgattac
ctgcccgctcagactcaactggttaacattggcgatcttgaagccgcttcaagagcacac
cttactgaggtagagcttagatatgaagacagacgcgtcgatccacttagacctctgtta
ccgccaaagtcactatacctgctgaccgagcagcttttttccgcctttaaaaagttccct
agaactctgcttaaaataggtgaaaatcaagacagtggcagtaatgccaagctcgaatca
ctgccagagttaacagcaaaccataaacttaaacagccactgacactacttcaagattat
gccactcagggcggcaggatcctctttagcgccgaatctgaggggcgtcgtgaagcactg
cttgagctatttgccaaaatagaccttaagccacaagtgttcgaacatctagatgatttt
gtcgactcaaaagtcaagcaaggccttattgtctcgcctttatctaaaggcgctattatc
gaaaaagccagaggggctaagttcagcatcatctgtgaaacagagttatttggccaccgt
atctcgcaaacaaggcgccgagataaacagagacagataagcagtgatgccctgattaag
aacttggcagagctcaaggtgggccaacctattgttcacttagatcacggtgtcgcccat
tatcaagggctcgaaaccctcgacactggaggactcgtcgctgagtaccttaaacttgaa
tatgctggtggagacaaactatatgttcccgtctcctctttgcaccttatcagtcgctac
agtgtcggcccagatgaagaggctcagcttaataaactaggtaatgagagctgggcaaaa
gcgaagaaaaaggcgattgaaaagatacgtgatgtcgcagtggaactactcgatgtttat
gccagaagacaggctagacctggcgatgcctgccatattgatcaagaggagtacgccctc
tttagtaacagtttcccatttgaggagactgtggatcaagaaacctccattaatgccgta
ttaaccgatatgagctcccctatcgccatggacagattagtgtgtggtgatgtcggtttt
ggtaaaactgaagtcgccatgcgcgcggcgtttgttgcagtcaatgacggtaaacaggtc
gctattttagttccaacaaccctgctggcacagcagcactttgaaaatttcaaggatagg
tttgccgattggccagttaaaattgaggtcatgtcgcgctttaaaacagcaaaagagcaa
aaagccgtattagaggatctgagtaatggcaaggtcgatatcgttatcggtactcataag
ctactgcaatctgaggcgaaatttgaaaacttaggcctgcttgttattgatgaagagcat
aggtttggtgttcgccaaaaagagaagattaaagccctcagagccaatgttgatatctta
accttaacggccaccccgatcccacgaaccctaaacatggccatgtctggtatgcgtgac
ctttccatcattgcgactccaccagctaagcgacttgcagtcaaaacttttgttagagag
tatgacaacgctgcgattagggaagcactgctgcgtgagatattacgtgggggccaagtt
tattttctccataacacagtggaaaccatcgagaaacgtgctgctgagatcagtgaactg
ctacctgaagcccgtgtgatcaccgcccatggacagatgcgagagcgtgaattagaaaag
gtgatgtctgatttttatcatcaaagattcaatgtcttagtctgtactactatcatagaa
actggtatcgatattccatcggcaaacaccatagtaatagagcgtgctgacaaatttgga
ctcgctcagctacaccaactaagaggccgcgtgggacgctcacatcatcaagcgtacgcc
tacttaatgacgccacatcctaagagcatgacaaaagatgcaaggaagcgtctcgaagcc
attggtgcactagaagatctcggtgcaggctttatgttagcgactcaagatctcgagata
cgtggcgccggagagctcttaggtgacgagcagagcggccatatctcaaaaattggtttt
acactctacatggagatgcttgaggatgccgttaaatctttaaaagagggtaaagagcct
tcattaagccagatgctaaggcgtcagtgtgaaatcgatcttcgcattcctgcactgctg
cccgaagactttgtccacgatgtgaatatcagactctctctttacaagcggatagctaac
tgtgaaacatcgcaagcgttggatgaattaaaagtcgagttaatcgaccgctttggactc
ctacctgactccactaaaaacttgatggagttaacgctttacaagcaccaagctacagcc
ttaggcatcaaaaaaatagagatgcatgccaaaggtggtagcctagagttcagcgacgat
catagtgtcgatccaggttttattatcggtttactgcaaagccaaccacaaaactatcga
atggacggcccgagtaagttaaaattcatcattccagctgaatctcacgcagataggttg
gcgctggttaaattgcttttggggcaattatcacaacaccgtcttggagattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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