KEGG T00676: Swoo

Shewanella woodyi ATCC 51908: Swoo_2012

Entry

Swoo_2012 CDS T00676

Definition

tryptophan synthase subunit beta

Orthology

K06001

tryptophan synthase beta chain [EC:4.2.1.20]

Organism

swd Shewanella woodyi ATCC 51908

Pathway

swd00260	Glycine, serine and threonine metabolism
swd00400	Phenylalanine, tyrosine and tryptophan biosynthesis
swd01100	Metabolic pathways
swd01110	Biosynthesis of secondary metabolites
swd01230	Biosynthesis of amino acids

Module

swd_M00023

Tryptophan biosynthesis, chorismate => tryptophan

Class

Metabolism; Amino acid metabolism; Glycine, serine and threonine metabolism [PATH:swd00260]
Metabolism; Amino acid metabolism; Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:swd00400]

SSDB

Motif

Pfam:

PALP

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

2471726..2473048

AA seq 440 aa
MDQLKDKLRSNNVNKLDYQLSLEDMPTQWFNFFPHLPKPLPPVRDNGKRSTLEISQLIRP
KILLEQNAPKENWIDIPEEVINKLIMCGRPTPLRRALSLEKHLKTPARIYFKREDTMATG
SFKLSTAVAQAYYAKQEGREILISETGAGQWGMSVALVSQMFGLDARIFMARCSLEQKPY
RQHYMKMLGCEVYPSPSTKTECGKELLLQTPGHPGSIGSAISEAIENALDTPGSAYLSGS
NVNHVHLHQTLLGLEVKQQLSMAGESNVDHLVACVSGGSNLCGFMMPFLPEKNSGAKIDM
LGVESTASPRLTQGTYEYCRSDVAGYTPEVLSHSMGESYIPAPVHVGGLRNHNSSPLVSL
LCREGILRAEALDEFNAFKAGQIMLKTEGILVAPESSHAVAAAIDLAEKARIENKESVIV
FLASGNGFLDLQGYNDVLNN

NT seq 1323 nt +upstreamnt +downstreamnt
atggatcaattgaaggataagctcaggtcaaataatgtgaataaattagattaccaactc
tctttagaagatatgcccactcagtggtttaatttcttcccccacctacctaaaccatta
cctccagtaagggacaatgggaagcgttcaactctggagattagccagttaattcgccct
aaaatattacttgagcaaaacgcgccaaaagagaattggatagatattcccgaagaggtg
ataaataagttgatcatgtgtggtcgaccgacaccattgcgcagagcattgagtctagag
aaacaccttaagacgcctgcaagaatctactttaagcgggaagacaccatggcgacaggg
agttttaaactctccactgcagttgcacaagcatactatgcgaaacaagaaggtagagag
attcttatatcggaaaccggtgcaggacaatgggggatgagtgttgctttggtgagtcag
atgtttggccttgatgctcgaatatttatggctaggtgttcattagagcaaaaaccgtat
cggcaacattatatgaaaatgcttggatgtgaagtatatccttcaccgtcaactaaaaca
gagtgtggtaaagaacttctactccaaactccaggtcaccctggaagtattggtagcgcg
attagtgaggctattgagaatgctttagacacgccgggatctgcttatttatctggaagc
aatgtaaatcatgtgcacttacatcaaaccttgcttggtttagaggttaagcagcagcta
tcgatggctggtgaatctaatgtggatcatcttgtagcttgtgtcagtggcgggagtaat
ttatgcggctttatgatgccatttctgcctgagaagaacagtggagccaaaattgatatg
ttgggtgtggagtcaactgcctccccacgattaacccaaggaacctatgagtactgtcgc
tctgatgttgctggttatacgccagaagtgctgagtcactccatgggagagagttacata
cctgctccagttcatgtgggcggtttacgaaatcacaatagctcccccttagtcagtcta
ctctgtcgagaaggtattcttcgcgcggaggcattagatgaatttaatgcctttaaagcg
ggccaaataatgctgaaaacagagggaatattagtcgcgcctgagtcttcccatgcggtt
gctgctgccatcgatcttgcggaaaaagcacgcatagaaaacaaagaatctgtgattgtg
tttttagctagcggtaatggttttttggatctgcaaggttacaacgatgtattaaataat
tga

All links

Pathway (6)   
   KEGG PATHWAY (5)   
   KEGG MODULE (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (4)   
   KEGG ENZYME (1)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SWD (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (25)   

Download RDF

DBGET integrated database retrieval system