KEGG   Shewanella woodyi: Swoo_3354
Entry
Swoo_3354         CDS       T00676                                 
Name
(GenBank) RNA methyltransferase, TrmA family
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
swd  Shewanella woodyi
Brite
KEGG Orthology (KO) [BR:swd00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:swd03009]
    Swoo_3354
Enzymes [BR:swd01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     Swoo_3354
Ribosome biogenesis [BR:swd03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    Swoo_3354
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 TRAM Methyltransf_25 Methyltransf_11 PCMT Met_10 MTS Methyltransf_23 Methyltransf_12 Methyltransf_15 UPF0020 RrnaAD Cons_hypoth95 GARS_N DOT1 CMAS DNA_methylase RMMBL Methyltransf_4 PrmA
Other DBs
NCBI-ProteinID: ACA87623
UniProt: B1KPU0
Position
complement(4110519..4111850)
AA seq 443 aa
MAQFFKAKPNSSKQLSAKVSLQVTRLDHLGAGIAQHNGKVVFIPGVLPGEKAMVQLTEQK
KRYSRAKLLNLETHSIDRVEPKCAHYHQCGGCDLQHLSLEKQRLHKESALVSLMAKLSHT
EAEALVPAIIGEQWHYRRRARLATFYHQETKRTTLGFRAQSSKEVIDISSCPVLAKSLSE
LISPLSKLLNQLASRRALGHVELIDVDNGQFVVVRATKELSDKDKEKLLSFAQEHKVNLI
VQGNEGELLVIKGPKELPFYTLNSDIKLSFTPGNFVQVNGEINRAMVDQAVQWLDVKADE
RVLDLFCGVGNFSLPLAKSGAEVIGVEGVPEMVAQARINAKQSDLSDVTFFHTDLSADLS
KEPWLGKVDKLLLDPARAGAFESLQWLKKMKPKSIVYVSCDPSSLARDSEPLLKHGYKLK
KLGLVDMFPQTHHIEAMALFELS
NT seq 1332 nt   +upstreamnt  +downstreamnt
atggcacagttttttaaagcaaaaccaaacagttcaaagcaactttcggcgaaagtatca
ctccaggtcacccgattggatcatttgggggctggcattgctcaacataacggcaaagtt
gtgtttattcccggtgtattacccggggaaaaagccatggttcagctcactgaacagaaa
aaacggtactcaagagcgaagttattgaatcttgagactcactctatcgaccgtgttgag
cccaaatgtgcacattatcatcaatgtggtggctgcgatcttcagcaccttagccttgag
aagcaacgacttcataaagagtctgcattagtaagtttaatggcgaaattaagccacact
gaagcagaagccttagttccagctattataggcgaacaatggcattatcgtcgccgtgct
cgtttagctactttttatcatcaagaaacaaagagaaccacattaggctttagagctcag
tcgagtaaagaggtgattgatatctcctcttgccctgtgttagccaaatctctgtctgag
ttaatctcgcctttatctaagctattaaatcaactggccagtagaagagcgctgggtcat
gtagagcttattgatgtagataatggtcagtttgtggtggttagagcgactaaggagctc
tcggataaggacaaagagaagctgctctcttttgcacaggagcataaagttaatctgatt
gttcagggcaatgaaggtgaactcttggtaattaaagggccaaaagagctgcctttttac
acattaaacagtgatattaaattgagctttacaccgggaaactttgttcaagtcaatggt
gagataaacagagcgatggttgatcaggcggttcaatggctggatgtaaaagctgatgaa
cgagtgctagatcttttctgtggtgtcggaaatttcagtctacctctagccaaatctggc
gctgaagtgatcggtgtagaaggggtccctgagatggtggcacaggccagaatcaatgct
aagcagagtgatttgtctgatgtaaccttctttcataccgacttaagcgctgatctctct
aaagagccttggctaggtaaagtagataagttactgctcgaccctgcaagagctggggcg
tttgagagtttgcaatggttaaagaagatgaaacctaaatcaattgtttatgtttcttgc
gatccctcgagcctagccagagacagtgagcctttgctaaagcatggttataagcttaaa
aaattgggcttagtcgatatgttccctcaaacacatcacattgaggctatggcactgttt
gagttgagttaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (21)   
   Pfam (21)   
All databases (31)   

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