KEGG T00538: Swit

Sphingomonas wittichii: Swit_3982

Entry

Swit_3982 CDS T00538

Definition

DNA ligase D

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

swi Sphingomonas wittichii

Pathway

swi03410	Base excision repair
swi03420	Nucleotide excision repair
swi03430	Mismatch repair
swi03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:swi03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:swi03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:swi03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:swi03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

4371700..4374213

AA seq 837 aa
MARLDEYNRKRDFAKTREPAGTLETRGRHRFIVQKHDATRLHYDFRLEMDGVLKSWAVTR
GPSLDPDDKRLAVRTEDHPVSYGGFEGTIPEGEYGGGTVMLWDEGSWAPIAGKSERDLDK
GHLHFTLDGHRMKGEWLLVRIKGRPGEKRENWLLRKIDDGEAGGSDDLVAHALTSVKTGR
TMAQIAADKAGESSLKGKRGKAFDAIMAKSDAHNARVARRPAKGKPSTTPPPAFRKPQLA
TLVDHVPTGGAWIHEIKFDGYRALVAVAGDRVKIFTRTGLDWTDRFAPVAEAVAALGLPP
ALIDGEIVSLDGAGNPSFSALQKAIKGEGGGGGGFELFAFDLLSLDGDDLTGLGTVERKA
RLAGLLPRSHPMIHYADHVVGAGEKLFDAMCRAGQEGIISKRADARYRAGRTTNWLKTKC
TRRQEFVIIGWSRSDSAARPFRALLLAQQGEDGLVYAGKVGTGFDRATMEMLAEKFVARA
RKTPPADVPRAEARGTSWVRPDLVAEIGFAEFTDEGILRQASFIGLRSDKEAAEVTAEKP
MPVEEAARPEEAPVKISNPDRVIFPEAKATKGDLARYYQAVGPIILPWLAHRPVSLVRCP
QGRAKQCFFQKHDSGSFGEHVHHVPIREKDGKTEDYLYVDDVAGILACVQMGTIEFHGWG
SRVERIEMPDRMIFDLDPDVGLDFADVRTAAKDIRRLLSDIGLTSFAMLSGGKGVHVVVP
LRPEAEWPAVKDFAHRFAEAMAQAEPDRFVATMAKAKRVGRIFIDYLRNQRGATAVVPYG
ARARENAPVAAPVAWNELDDFDKAGAFTIKDADRLLKRASSKALKGWGVADQVLPDL

NT seq 2514 nt +upstreamnt +downstreamnt
atggcccggctcgacgaatataaccgcaagcgcgacttcgcgaagacgcgcgagccggcc
ggcaccctggagacgcgcggacgccaccgcttcatcgtccagaagcacgacgcgacccgg
ctgcactatgacttccggctggagatggacggcgtgctcaagagctgggcggtgacgcgc
ggccccagcctcgaccccgacgacaagcggctggcggtccgcaccgaggaccatccggtg
tcctatggcggtttcgaggggaccattcccgaaggcgaatatggcggcggcacggtgatg
ctgtgggacgagggcagctgggcgccgatcgcgggcaagagcgagcgcgacctcgacaag
ggccatctccacttcaccctcgacggccatcggatgaagggcgaatggctgctcgtccgg
atcaaggggcggccgggcgagaagcgcgagaactggctgctccgcaagatcgacgacggc
gaggcgggcggcagcgacgatctcgtcgcgcacgcgctgaccagcgtgaagaccgggcgg
accatggcccagatcgccgccgacaaggcgggcgaatcgagcctgaagggcaagcgcggc
aaggcgttcgacgcgatcatggcgaagtcggacgcgcacaacgcccgggtggcgcggcga
ccggccaaggggaaaccctcgaccacgccgccgccggccttccgcaagccgcagctcgcg
acgctggtcgatcatgtcccgaccggcggcgcctggatccacgagatcaagttcgacggc
tatcgcgccctggtcgcggtggccggggaccgggtgaagatattcacccgcaccggcctc
gactggaccgaccggttcgcgccggtggcggaggcggtcgccgcgctcggcctgccgccg
gcgctgatcgacggggagatcgtcagcctcgacggcgccggcaatcccagcttctccgca
ctgcaaaaggcgatcaagggtgaaggcggcgggggcggcggcttcgagctgttcgccttc
gacctgctctcgctcgacggcgacgacctcaccgggctcggcacggtcgagcgcaaggcg
cggctcgccggactgctgccccgcagccacccgatgatccactatgccgaccatgtcgtt
ggcgcgggcgagaagctgttcgacgcgatgtgccgcgccgggcaggaggggatcatctcg
aagcgcgccgacgcgcgctaccgcgccgggcggacgaccaactggctgaagaccaaatgc
acccggcggcaggagttcgtcatcatcggctggagccggagcgactccgccgcgcgtccc
ttccgcgcgctgctcctcgcgcaacagggcgaggacgggctggtctatgcgggcaaggtc
ggcaccggcttcgatcgcgcgacaatggagatgctggcggagaaattcgtcgcccgcgcc
cgcaagaccccgcccgccgacgttccccgcgccgaggcgcgcggcacgtcgtgggtccgg
cccgacctggtcgccgagatcggctttgccgagttcacggatgaggggatattgcggcag
gcgagcttcatcgggctgcgatccgacaaggaggccgccgaggtgacagcggagaagccc
atgcccgtcgaggaagccgcccggcccgaggaagcgccggtgaagatcagcaaccccgac
cgggtgatcttccccgaggcgaaggcgaccaagggcgatctcgcccgctattatcaggcg
gtcggtccgatcatcctgccctggctggcacaccgtccggtcagcctggtgcgctgcccg
caggggcgggcgaagcaatgcttcttccagaagcatgattcgggcagcttcggcgagcat
gtccaccacgtcccgatccgggagaaggacggcaagaccgaggattatctctatgtcgac
gacgtcgccggcatcctcgcctgcgtccagatggggacgatcgagttccatggctggggc
tcgcgggtcgagcggatcgagatgcccgaccggatgatcttcgatctcgatcccgatgtc
ggcctcgacttcgccgacgttcgcacggcggcgaaggacattcgccggctgctgtccgac
atcggcctgaccagcttcgcgatgctgtcgggcggcaagggcgtgcacgtcgtcgtgccg
ctgcgtcccgaggcggaatggccggcggtgaaggatttcgcgcaccgcttcgccgaggcg
atggcgcaggccgagcccgaccgcttcgtcgcgaccatggccaaggcgaagcgggtcggc
cgcatcttcatcgactatctgcgcaaccagcgcggcgcgaccgcggtggtcccctatggc
gcgcgggcgcgcgagaacgcgcccgtggcggcgccggtggcctggaacgagctcgacgat
ttcgacaaggcgggcgccttcacgatcaaggatgccgaccggctgctcaagcgggcgtcg
tcgaaggcgctcaagggctggggcgtggcggaccaggtgctgccggacctgtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SWI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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