KEGG   Sphingomonas wittichii: Swit_4885Help
Entry
Swit_4885         CDS       T00538                                 

Definition
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23 4.2.99.18)
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
swi  Sphingomonas wittichii
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:swi00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    Swit_4885
Enzymes [BR:swi01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Swit_4885
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Swit_4885
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
JGI: 
UniProt: 
Position
5380919..5381731
Genome map
AA seq 270 aa AA seqDB search
MPELPEVETTVRGLRPPLEGRRLTRVETRRADLRRPFPADLRQRMTGATITGLGRRAKYG
LIETDRGDVMVFHLGMSGRWRIDPSEIGAHDHLVLETDEGRTLSLCDPRRFGSVDLVRGE
ELAGFGPFKALGPEPLGPDLTGAHLAGALEGRVAPIKAMLLDQRIVAGLGNIYVCEALHM
TGIAPTTMAGRIAKKRLDRLVDSIREVLAAAIEAGGSTLRDYARPDGELGYFAKQWRVYG
REGEPCHCGTVIRRRVDGGRSTFYCPKCQK
NT seq 813 nt NT seq  +upstreamnt  +downstreamnt
atgcccgagcttcccgaagtagaaaccaccgtccgcggtctgcgtcccccgctcgagggg
cggcgtctgacccgggtcgagacccgccgcgccgacctgcggcgcccctttccggccgac
ctgcgccagcggatgaccggggcgacgatcaccgggctcggccgccgcgccaaatatggc
ctgatcgagaccgatcgcggcgacgtgatggtcttccacctcggcatgtcgggccgctgg
cggatcgacccgagcgagatcggcgcgcacgatcatctggtgctggagaccgacgagggg
cggacgctgtcgctgtgcgacccgcgccgcttcggatcggtcgacctcgtccggggcgag
gaactcgccgggttcggcccgttcaaggcgctggggcccgagccgctgggccccgatctg
accggcgcccatctcgccggggcgctcgaagggcgcgtcgcgccgatcaaggcgatgctg
ctcgaccagcggatcgtcgccgggctcggcaacatctatgtgtgcgaggcgctgcacatg
accggcatcgcgccgaccaccatggcgggccggatcgcgaagaagcggctcgaccggctg
gtcgattcgattcgcgaggtgctggcggcggcgatcgaggcgggcggctccacgctgcgc
gactatgcccggcccgatggcgagctcggctatttcgccaagcagtggcgcgtctatggc
cgcgaaggcgagccgtgccattgcggcaccgtgatccggcgccgcgtcgatggcggccga
tcgaccttctactgccccaaatgccagaaatag

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