KEGG   Shewanella piezotolerans: swp_1968
Entry
swp_1968          CDS       T00791                                 
Name
(GenBank) NAD-dependent DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
swp  Shewanella piezotolerans
Pathway
swp03030  DNA replication
swp03410  Base excision repair
swp03420  Nucleotide excision repair
swp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:swp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    swp_1968
   03410 Base excision repair
    swp_1968
   03420 Nucleotide excision repair
    swp_1968
   03430 Mismatch repair
    swp_1968
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:swp03032]
    swp_1968
   03400 DNA repair and recombination proteins [BR:swp03400]
    swp_1968
Enzymes [BR:swp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     swp_1968
DNA replication proteins [BR:swp03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     swp_1968
DNA repair and recombination proteins [BR:swp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     swp_1968
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     swp_1968
   MMR (mismatch excision repair)
    DNA ligase
     swp_1968
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      swp_1968
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT DZR_2
Other DBs
NCBI-ProteinID: ACJ28725
UniProt: B8CN91
Position
2035205..2037211
AA seq 668 aa
MHANELEILELTQQLNLHNYHYYVDDNPTIPDVEYDRLLKRLIELETQSPEFAKADSPTQ
RVGGEALAKFEQITHLKPMLSLDNVFDETEFNGFHSRITDKVGTALSYCCEPKLDGLAVS
IVYRDGVFERAATRGDGQTGENITENVRTIKSIPLKLRGDNFPPLVEVRGEVIMPHKAFN
ALNERARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPESWELADSHY
GQLEQLRSWGVPVSQEVKVCDSVTEVMDYYNDIQQRRSSLDFEIDGVVLKVNQIAHQLSL
GFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHN
ADEIARLGVKVGDTIIIRRAGDVIPQIVAIVADKRPDDAQDIVFPERCPVCDSEVERIEG
EAVARCSGGLFCEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVESPADLFKLTAS
AMTMLERMGMKSATKLVAAIEVAKETTFARFLYALGIREVGEATAANLAAYFKTLDALKG
ASAEEFIKVDDVGAIVAAHLAHFLAQPHNLEVIDKLIAVGVSWPAIEEVAEEDLSLKGQT
WVLTGTLTQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGAAAGSKLTKAQELGVKVIDE
EALIAILS
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgcacgctaatgaacttgagatcctagaactgacccagcaattaaatctgcataattat
cactactatgttgatgataacccgacaattccagatgttgagtacgacaggttacttaaa
aggctgatagagctagagacccaaagtccagagtttgctaaagccgactcgcctacacag
agagtaggaggtgaggcattagctaagtttgaacagatcacccacctcaagccaatgtta
agccttgataatgtatttgatgaaaccgaatttaatggctttcactcgaggataaccgat
aaagtcggtacagcgctgagctattgctgtgaaccaaagcttgatggcttggctgtgagt
attgtgtaccgtgatggtgtatttgagcgagcagcgactcgtggcgatggtcaaacgggt
gagaatattactgaaaatgtccgcactattaagtcaattcctttaaagttgcgcggtgat
aattttccaccattagttgaggtacgcggcgaagtgattatgccgcataaagccttcaat
gcgcttaatgagcgtgcccgtgcgaaaggggaaaagctgtttgttaatcctcgcaatgca
gctgcgggcagtttacgtcagttagacagtaaaattactgctagccgagctttggggttc
tacgcttatgcactcggagtcgttgagcctgaatcgtgggagcttgccgatagccattat
ggccaactagagcaactgcgctcatggggcgtcccggttagccaagaagtcaaagtctgt
gactcggtcacggaagtcatggattattacaatgatattcagcaacgtcgcagcagttta
gatttcgaaatcgatggtgttgtgttgaaagtgaaccagattgctcatcagttgagttta
ggttttgtggctaaagcgccgcgctgggcgactgcatttaagtttccagctcaagaggag
atgaccttattagaaggggtcgattttcaagttggtcgtactggagcggttacacctgtc
gcacgtcttaagcctgtatttgttggtggcgtgaccgtctcaaatgccactttgcataat
gctgatgaaattgcccgtcttggcgtaaaggttggagataccatcattattcgccgagca
ggcgatgtcattccccaaattgttgcaatagtcgctgataaacgtccagatgatgcccaa
gatattgtgtttcccgagcggtgccctgtgtgtgatagtgaagtggaacgtattgaaggc
gaagcggtagcgcgttgtagtggtggcttattttgtgaagcacaacgtaaagaagcaata
aaacattttgcttctagaaaggcgcttgatatcgatggtatgggtgacaaagttgttgaa
cagttaattgataaagagctagtagaaagccctgcggatctatttaagctgaccgcatca
gcgatgacaatgctagagcgtatggggatgaaatcagcgactaaattagttgcggccatt
gaagtcgccaaagagacgacttttgctcgctttctctatgcgttaggtattagagaagtg
ggagaagccaccgctgcgaatcttgctgcctactttaaaacactggatgcactaaaaggc
gcgtcagcagaagagtttatcaaggtcgatgatgttggagcgattgttgcggctcattta
gcgcacttcttggcacagcctcataatcttgaagtgatagataagcttattgcggtggga
gttagctggccagcaattgaagaggtggctgaagaggatttatcacttaaaggtcaaacc
tgggtattaaccggtacgttaacacagcttaatcgaaatgatgctaaagctcagctgcag
gcattaggggcaaaagttgctggtagtgtgtctaaaaataccgattgtttggtcgctggc
gcagcggctggctcgaagttgactaaagctcaagagcttggtgtgaaggttattgatgaa
gaggcattgattgctattttgtcatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (29)   

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