KEGG   Staphylococcus xylosus SMQ-121: SXYLSMQ121_2289
Entry
SXYLSMQ121_2289   CDS       T03311                                 
Name
(GenBank) DNA polymerase III subunits gamma and tau
  KO
K02343  DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
Organism
sxl  Staphylococcus xylosus SMQ-121
Pathway
sxl03030  DNA replication
sxl03430  Mismatch repair
sxl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sxl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SXYLSMQ121_2289
   03430 Mismatch repair
    SXYLSMQ121_2289
   03440 Homologous recombination
    SXYLSMQ121_2289
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sxl03032]
    SXYLSMQ121_2289
   03400 DNA repair and recombination proteins [BR:sxl03400]
    SXYLSMQ121_2289
Enzymes [BR:sxl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     SXYLSMQ121_2289
DNA replication proteins [BR:sxl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     SXYLSMQ121_2289
DNA repair and recombination proteins [BR:sxl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     SXYLSMQ121_2289
SSDB
Motif
Pfam: DNA_pol3_delta2 AAA RuvB_N DNA_pol3_gamma3 AAA_19 AAA_30 AAA_5 AAA_22 TIP49 PIF1 AAA_16 AAA_assoc_2 ResIII AAA_14 nSTAND3 Mg_chelatase TniB SesA AAA_7 AAA_18 AAA_24 TsaE TetR_C_27
Other DBs
NCBI-ProteinID: AID43720
Position
complement(2475456..2477174)
AA seq 572 aa
MNYQALYRMFRPQSFDDVVGQEHVTKTLRNAISKSKQSHAYIFSGPRGTGKTSIAKVFAK
AINCLERADGEPCNECAICKGITRGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKF
KVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRSQRFDFKAISQ
SEIVERLKFVAEEQQIDYDEAALDFIAKASEGGMRDALSIMDQAIAFGDEHLALEDALNV
TGSVDAKALDNLFREVVEGDVRSAFATYHKFVSQGKEVNRLINDMIYFVRDTIMNKTSNV
ETEYDALMHFELDILYKMIDIINDTLVSIRFSVNQSVHFEVLLVKLAEMIKETPEHVQTV
ATTGVATEPNNDVLLQRMEQLENELKSIKANGVATGTPTPQQTKRTSSKGGQSKNAFSMQ
QIAKVLDKANKDDIKQLKNHWQEVVDHAKNNDMKSLVSLLQNSEPVAASETHVLIKFEEE
IHCEIVNKDDEKRENIENVVCSIIDKTVKVVGVPADQWMRVRTEYLQNRKNGSTTDGEND
EQTKAQTTEEVDVVQKAKDLFGESTVNVIDEE
NT seq 1719 nt   +upstreamnt  +downstreamnt
gtgaattatcaagctttatatagaatgttccgcccgcaaagttttgatgatgtcgtagga
caagaacatgttaccaaaacactgcgcaatgcgatttcaaaaagtaaacaatctcatgct
tatatatttagcggaccgaggggtactgggaaaacaagtatcgccaaagtgtttgccaaa
gctattaattgtcttgagcgtgcagacggagaaccttgtaatgaatgtgcaatctgtaaa
ggcatcactcgtggcacaaactcagacgttattgaaattgatgcagctagtaataatggt
gtagatgaaattagaaatattagagataaagttaaatatgcacctagtgaatcgaaattt
aaagtttatatcatagatgaggtgcacatgctaacgactggtgcgtttaatgcattgctt
aaaacattggaagaaccaccagcacatgcgatttttatattagcgacaacagaacctcac
aaaatccctcctacaattatctctaggtcgcagagatttgattttaaagcgattagtcaa
agtgaaatcgttgagagattaaaatttgtagcagaagagcaacaaattgattatgatgaa
gcggcgttagattttatagcgaaagcttcagaaggcggtatgcgtgatgcgctaagtatt
atggaccaagccattgcttttggtgatgagcacttagccttagaagatgctttgaatgtt
acgggtagtgtagatgcgaaagcgttagacaatttattcagagaggttgttgaaggggat
gtaagaagtgcctttgcaacttaccataaattcgtatctcaaggtaaagaagtaaatcga
ttaattaatgatatgatttattttgttagagatacgattatgaataaaacttctaatgta
gaaactgaatatgatgcattaatgcattttgagttagatatactatacaaaatgatcgat
attattaacgatacacttgtatcaattcgtttcagcgtgaatcaaagcgtacattttgaa
gtgttattagtaaaattagcggaaatgattaaagaaacacctgaacacgttcaaacagtc
gctacaacaggcgttgcaacagagcctaataatgatgtattgctacaaagaatggaacaa
cttgaaaatgagcttaaatcaattaaagcaaatggtgtggcgacgggtacaccaacacca
caacaaacaaaacgcacttctagtaaaggtggacaatctaaaaacgccttttcaatgcaa
caaattgccaaagttttggataaagcaaataaagatgatatcaaacaattaaagaatcat
tggcaagaagttgtcgatcatgctaaaaataatgatatgaaatctctagttagcttgtta
caaaattccgaaccagttgcggctagtgagactcatgtgcttatcaagtttgaagaagag
attcattgtgaaattgttaataaagatgatgaaaaacgagagaatatcgaaaatgtcgtt
tgtagtattatagataaaaccgttaaagtagttggtgtgccagcagatcaatggatgaga
gtgagaacagaatatcttcaaaatagaaaaaatggctcgacaacagatggggaaaatgac
gaacaaactaaggctcaaacaactgaggaagtagatgttgttcaaaaagcaaaagactta
ttcggtgaaagcactgtaaatgttatagatgaagagtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (23)   
   Pfam (23)   
All databases (35)   

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