KEGG   Sphingobium yanoikuyae: A6768_10095
Entry
A6768_10095       CDS       T05170                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
sya  Sphingobium yanoikuyae
Pathway
sya03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sya00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A6768_10095
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sya03019]
    A6768_10095
   03016 Transfer RNA biogenesis [BR:sya03016]
    A6768_10095
Enzymes [BR:sya01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     A6768_10095
Messenger RNA biogenesis [BR:sya03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     A6768_10095
Transfer RNA biogenesis [BR:sya03016]
 Prokaryotic type
  tRNA degradation factors
   A6768_10095
SSDB
Motif
Pfam: RNB CSD2 S1 RNase_II_C_S1 HTH_12
Other DBs
NCBI-ProteinID: ATI80319
UniProt: A0A291MYY8
Position
2182419..2184833
AA seq 804 aa
MASTQKQKKAAPARAKVRPAGFPTRQQVMDFITESDTPAGKREIAKAFGLKGQEKIALKA
LLKDMADEGLLDIGPARAFHKMGGVPKVTVLRIVDVDDTTLIATPERWEAEGQPAPRIRV
VERGKRGALTIGDRILARTEEAGKGWLAHPMKKLAKATEMLLGVVEEMADGKLWLRPVDK
RIRKDTPISDIGTAKKGDLVLAEPTGRPPRISARVTDILGDPFAPRSFSLIAIHKHGIPH
VFPEAVEEEAVTASKLPLHEDKREDLRHLPIVAIDPVDARDHDDAVWAAPDEDPANEGGY
KAIVAIADVSYYVRPGSALDREARKRGNSVYFPDLVVPMLPHQLSSDMCSLRAGQDRAAM
ACHLVIDAQGKVKSFRFSRALIRVAAVLAYENAQAAIDALSSVRPEPVEGQGRAAGEAAS
PAAQQAASTSLSPNGVDLVEHALKPLWACWALLRKAREKRDPLALDLPERRVVLDEWGKI
VSVAVRERLDAHMLIEDYMIAANVAAAKALEAKKAPVMYRVHETPGRDKLVALKEYLATF
DIDFALGQVIRPSTFNQLIKKVGESEEKEQIMTQILRSQTQAYYAPQNMGHFGLALGSYA
HFTSPIRRYADLLVHRALVGAYDLELPAPKDKAIPDRSSLSQEDYENMGRVGEMISGHER
RAMEAERETIDRYVAAFLSAHVGEVVKARITGVQNFGFFATVEGLGGDGLVPVSTLGAEH
FFFDEAGKALQGVESGDRYTVGQRLELRLAEADPINGALRFELPDNPSPRGSPLKRDRTR
PKIHRGRPTNIRHIGSGRGKHKKR
NT seq 2415 nt   +upstreamnt  +downstreamnt
atggcatcgacccagaagcagaagaaggcggccccggcccgcgcgaaagtccgtcccgcc
gggttccccacccggcagcaggtgatggacttcatcaccgagtccgacaccccggccggc
aagcgcgaaatcgccaaggcgttcggcctcaaagggcaggaaaagatcgccttgaaggcg
ctgctcaaggacatggcggacgagggcctgctcgacatcggaccggcccgcgccttccac
aagatgggcggcgtgcccaaggtgacggtgctgcgcatcgtcgatgtcgacgacactacc
ctgatcgccacccccgaacgctgggaggccgagggccagcccgcgccccgcatccgcgtg
gtcgagcggggcaaacgcggcgcgctgacgatcggcgaccgcatcctcgcccgcaccgag
gaagcgggcaagggctggctcgcccatccgatgaagaagctcgccaaggcgaccgagatg
ctgctcggcgtggtcgaggaaatggccgacggcaagctgtggctgcgcccggtcgacaag
cgtatccgcaaggatacgccgatcagcgacatcggcaccgcgaagaagggcgacctggtc
ctggctgagccgaccggccgcccgccacggatcagcgcgcgcgtcaccgacattctgggc
gatcccttcgccccgcgcagcttcagcctgatcgcgatccacaaacatggcatcccccat
gtcttccccgaagcggtggaggaggaagcggtcaccgcgtcgaagctgccgctgcatgag
gacaagcgcgaggatctgcgccatctgccgatcgtcgcgatcgacccggtcgatgcccgc
gaccatgatgacgccgtctgggccgcgccggacgaagacccggccaatgaaggcggctac
aaggcgatcgtcgcgatcgccgatgtcagctactatgtccgccccggcagcgcgctcgac
cgcgaagcgcgcaagcgcggcaacagcgtctatttccccgacctggtcgtgccgatgctg
ccgcaccagctctcgtccgacatgtgttcgctgcgcgccgggcaggaccgcgccgccatg
gcctgccatctggtgatcgacgcgcagggcaaggtaaagagcttccgcttctcccgcgcc
ctcatccgcgtcgccgccgtcctcgcctatgaaaatgcgcaggccgcaatcgatgctctt
tcttccgttcgccctgagcctgtcgaagggcagggccgagccgcaggcgaggctgcttcg
cctgcggctcagcaagcggcttcgacttcgctcagcccgaacggggtggatctggtggaa
catgccctcaagccgctctgggcctgctgggcgctgctgcgcaaggcccgcgaaaagcgc
gatccgcttgcgctcgacctgcccgaacggcgcgtcgtcctcgacgaatggggcaagatc
gtcagcgtcgcggtgcgcgaacggctcgacgcccatatgctgatcgaggattatatgatc
gccgccaacgtcgccgccgccaaggcgctggaggcgaagaaggcgccggtcatgtaccgc
gtccatgaaacgccgggccgcgacaagctggtcgcgctcaaggaatatctcgccaccttc
gacatcgacttcgcgctgggccaggtgatccgcccgtccaccttcaaccagctgatcaag
aaggtcggcgagtcggaggagaaggagcagatcatgacccagatcctgcgctcccagacc
caggcctattatgcgccgcagaatatgggccatttcggcctggcgctgggcagctacgcc
catttcacctcgcccatccgccgctatgccgaccttctggtccatcgcgcgctggtcggc
gcctatgatctcgaactgcccgcgcccaaggacaaggcgatccccgaccgctcctccctc
agccaggaggattatgagaatatgggccgggtcggcgagatgatctcgggccatgaacgc
cgcgcgatggaggcggagcgcgagacaatcgaccgctatgtcgccgccttcctgtcggcc
catgtcggcgaggtggtgaaggcgcggatcaccggggtccagaatttcggcttcttcgcc
acggtcgaggggctgggcggcgacggcctcgtgcccgtatcgacgctgggcgccgaacat
ttcttcttcgacgaagcgggcaaggcgctgcagggcgtcgaaagcggcgaccgctatacg
gtcggccagcggctggaactgcgtctcgccgaagccgatccgatcaacggcgcgctgcgc
ttcgagctgcccgacaatccttccccgcgcggcagtccgctgaaacgcgaccgcacccgc
ccgaaaatccaccgcggccgccccaccaacatccgccacatcggcagcggccggggcaag
cacaagaaacggtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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