KEGG   Sphingobium yanoikuyae: A6768_24465
Entry
A6768_24465       CDS       T05170                                 
Name
(GenBank) DNA topoisomerase
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
sya  Sphingobium yanoikuyae
Brite
KEGG Orthology (KO) [BR:sya00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sya03032]
    A6768_24465
   03400 DNA repair and recombination proteins [BR:sya03400]
    A6768_24465
Enzymes [BR:sya01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     A6768_24465
DNA replication proteins [BR:sya03032]
 Prokaryotic type
  DNA Topoisomerases
   A6768_24465
DNA repair and recombination proteins [BR:sya03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      A6768_24465
SSDB
Motif
Pfam: Topoisom_I Top1B_N_bact
Other DBs
NCBI-ProteinID: ATI82846
UniProt: A0A291N686
Position
complement(5265947..5266954)
AA seq 335 aa
MSSPAIIHSHDGMPGISRRALKQGWAYRAADGSRITDRDEIDRLNAIAMPPAYRDCWFCP
SPHGHIQATGYDERGRKQYRYHPDFRAAREAEKYAGCPAFGRALPQLRARMEEDLSRRGL
RKARTIAAVVRLLDLAKLRVGNEHYATTNKSFGATTLRRRHVDLNGRSLTLRYRAKSGKE
QQLSITDSRLLRFVRAVQDLPGQHLFQYLDEDGEAHPISSSDVNAYIAQAMGGDFTAKHF
RTWGASTIAFETLAAGHVSLKEMIAPVAAALGNTPAISRKSYIHPALIDLCKDGQDEWRQ
GLRLPRRTRYLSRHERGLIAFLDDLANAPPLAAAA
NT seq 1008 nt   +upstreamnt  +downstreamnt
atgtcgtcccccgccatcatccacagccatgacggcatgcccggcatcagccggcgcgca
ctgaagcagggatgggcctatcgcgcggcggacggcagccgcatcaccgaccgcgacgag
atcgaccggctgaatgcgatcgccatgccgccggcctatcgcgactgctggttctgccct
tcgccccacggccatatccaggcgaccggctatgacgagcgggggcgcaagcaatatcgc
tatcaccccgatttccgggccgcgcgcgaggcggagaaatatgccggctgccccgccttc
ggccgcgccctgccgcagctgcgggcgcggatggaggaggatctgtcgcgacgcggcctg
cgcaaggcgcggacgatcgccgcggtggtacggctgctggacctcgccaagctgcgggtc
ggcaacgaacattatgccaccaccaacaagagtttcggcgcgaccacgctgcggcggcgg
catgtcgacctgaatggccgcagcctgaccctgcgctaccgcgccaagtccggcaaggaa
cagcaattgagcatcaccgacagccgcctgctgcgattcgtgcgggcggtgcaggatctg
ccgggccagcatctgttccaatatctggacgaggatggcgaggcgcatccgatcagttcg
agcgacgtcaacgcctatatcgcgcaggccatgggcggcgacttcaccgccaagcatttt
cgtacctggggcgcatcgaccatcgccttcgagacgctggcggcgggccatgtctcgctc
aaggagatgatcgccccggtcgccgcggcgctgggcaacacaccggcgatcagccgcaaa
tcctatatccaccccgccctgatcgacctgtgcaaggacggacaggatgaatggcggcag
gggcttcgcctgccgcgccggacgcgctatctgtcgcgtcacgaacgcgggctgatcgcg
ttcctcgacgatctggccaacgcgcccccgctggcagcggcggcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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