KEGG   Sphingobium sp. YBL2: TZ53_04695
Entry
TZ53_04695        CDS       T03855                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
syb  Sphingobium sp. YBL2
Pathway
syb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:syb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TZ53_04695
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:syb03021]
    TZ53_04695
   03019 Messenger RNA biogenesis [BR:syb03019]
    TZ53_04695
Transcription machinery [BR:syb03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     TZ53_04695
Messenger RNA biogenesis [BR:syb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     TZ53_04695
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB ATPase_2 Spore_III_AA AAA_22 NACHT AAA AAA_25 AAA_14 GpA_ATPase
Other DBs
NCBI-ProteinID: AJR23168
UniProt: A0A0C5XQJ7
Position
979130..980386
AA seq 418 aa
MHLKDLKKKAPAELVTMAEELGVEGASTLRKQDLMFAILKVEADNGEQIMGEGTIEVLPD
GFGFLRSPEANFLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRAPKDGERYFALTKLISVN
FDDPEVVRHRVNFDNLTPLYPTQKLTLDATDPTVKDKSARVIDIVSPQGKGQRALIVAPP
RTGKTVLLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAQRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPALDV
GKSGTRKEELLVDKAKLSKMWVLRRILMQMGTVDAMEFLLDKMKDSKTNEDFFDSMNQ
NT seq 1257 nt   +upstreamnt  +downstreamnt
atgcaccttaaggatctcaagaaaaaagcgcccgccgaactcgtgaccatggcggaggaa
ctgggcgtcgaaggcgcatcgaccctgcgcaagcaggacctgatgttcgcgatcctcaag
gtcgaggccgacaatggcgagcagatcatgggcgagggcacgatagaggtgctgcccgac
ggcttcggcttcctgcgctcgcccgaagcgaacttcctcgccggtcccgacgacatctat
gtctcgcccaaccaggtccgcaaattcggcctgcgcaccggcgacacggtggaaggcgaa
atccgcgcgcccaaggatggcgagcgttatttcgcgctgaccaagctcatctcggtcaat
ttcgacgatcccgaagtcgtccgccatcgcgtcaatttcgacaatctgacgccgctctac
ccgacgcagaagctgacgctcgacgcgaccgacccgaccgtcaaggacaagtcggcccgc
gtcatcgacatcgtctcgccgcagggcaagggccagcgcgccctgatcgtcgcgccgccc
cgcaccggcaagacggtgctgctccagaatatcgccaaggcgatcaccgacaatcacccc
gaagtcttcctgatcgtcctgctgatcgacgagcgtccggaagaagtcaccgacatgcag
cgcagcgtgaagggggaggtggtttcctcgaccttcgacgaaccggcgcaacgccacgtc
caggtcgctgaaatggtgatcgaaaaggccaagcgcctcgtggaacacaagaaggacgtg
gtgatcctgctcgactcgatcacccgcctcggccgcgcctacaacacggtggtgccgtcc
tcgggcaaggtgctgaccggcggcgtcgacgccaatgcattgcagcggccgaagcgcttc
ttcggcgcggcgcgcaatatcgaggaaggcggttcgctctcgatcatcgccaccgcgctg
atcgacaccggcagccgcatggacgaagtcatcttcgaagagttcaagggcaccggcaac
tcggaaatcgtgctggaccgcaaggtggcggacaagcgcatcttcccggcgctggacgtc
ggcaagtccggcacccgcaaggaagaactgctggtcgacaaggccaagctttccaagatg
tgggtgctgcgccgtatcctgatgcagatgggcacggtcgacgcgatggaattcctgctc
gacaagatgaaggattccaagaccaacgaggatttcttcgattcgatgaaccagtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (21)   

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