KEGG T00163: syc1253

Synechococcus elongatus PCC6301: syc1253_d

Entry

syc1253_d CDS T00163

Gene name

clpC

Definition

ATP-dependent Clp protease regulatory subunit ClpC

Orthology

K03696

ATP-dependent Clp protease ATP-binding subunit ClpC

Organism

syc Synechococcus elongatus PCC6301

Class

SSDB

Motif

Pfam:

AAA_2 Clp_N ClpB_D2-small AAA AAA_5 AAA_16 AAA_22 Sigma54_activat AAA_18 AAA_17 UVR IstB_IS21 AAA_14 AAA_25 Zeta_toxin Arch_ATPase AAA_19 Mg_chelatase RNA_helicase RuvB_N AAA_28 NACHT ResIII T2SE AAA_3 DNA_pol3_delta2 MMR_HSR1 Torsin AAA_23 Lipase_GDSL_2

Other DBs

NCBI-GI:

NCBI-GeneID:

CyanoBase:

CYORF:

UniProt:

Position

1362403..1364922

AA seq 839 aa
MPVLESAYRHAGREAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVA
AKVLKSMGVNLKDARIEVEKIIGRGSGFVAAEIPFTPRAKRVLELSLEEARQLGHNYIGT
EHLLLGLIREGEGVAARVLENLGVDLSKVRTQVIRMLGETAEVSTGGGQGRTKTPTLDEF
GSNLTQQAADGKLDPVVGRQKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIA
TGDIPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEIRSAGDVILVIDEVHTLIG
AGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIERDAALERRFQPVMVGEPSVDD
TIEILRGLRERYEQHHKLKIADEALEAAAKLADRYISDRFLPDKAIDLIDEAGSRVRLMN
SQLPPAAKELDKELRQVLKDKDDAVRSQDFDKAGELRDREMEIKTQIRSIAQSKKADGTS
STDDSPIVTEEDIAHIVASWTGVPVNKLTESESTKLLNMEETLHSRLIGQDEAVKAVSRA
IRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALAAYFFGSEEAMIRLDMSEYMERHTV
SKLIGSPPGYVGYNEGGQLTEAVRRRPYTVVLLDEIEKAHPDVLNLLLQLLEDGRLTDAK
GRTVDFKNTLIILTSNIGSKVIEKGGGGLGFEFSGVDEAENQYNRIRSLVNEELKQYFRP
EFLNRLDEIIVFCQLNKEEVKEIADIMLREVFGRMLEKGISLSVTEKFKDRLVEEGYNPS
YGARPLRRAIMRLLEDSLAEEFLSGKLREGDTAVVDIGEEGKVQVLAQEKRELLPQAVD

NT seq 2520 nt +upstreamnt +downstreamnt
atgcctgtgctagaatcggcctaccggcacgcaggcagggaagctatgtttgaacgcttt
accgagaaagccattaaggtcatcatgctggctcaggaggaagcgcgtcgcctgggtcat
aacttcgtcggcaccgagcaaattttgctaggcctcatcggtgaaggcaccggcgttgcc
gccaaagttttgaaatcgatgggtgtcaaccttaaggatgctcgcatcgaggttgaaaaa
atcattggccgtggctcgggttttgtcgccgctgagattccgtttactcctcgcgccaag
cgagtcctggaactctcactggaagaagcgcggcaactgggccacaactacatcggcact
gagcacctcttgcttggactgattcgggaaggtgaaggcgttgcggcccgtgttctcgaa
aacttgggcgttgatctttcaaaagtacggacccaagtcatccgcatgctcggcgagacg
gctgaagtctcaacgggtggcggtcaaggtcgcaccaaaacgccaaccttggatgaattt
ggctccaatctgacccagcaggctgccgacggcaagctggatccggtggtgggtcgccaa
aaagaaattgagcgggtgatccaaattctcggccgccgcaccaagaataaccctgtgctg
attggggaaccgggcgtcggtaaaactgcgatcgcggaaggcttggcccagcgcattgcc
accggcgatattcccgacattctggaagacaagcgcgttgtcacccttgatattggtctg
ctggttgcgggcaccaagtatcgcggtgagttcgaagaacgcctcaagaaaatcatggac
gagatccgctcggcgggggacgtcatcttggtgattgacgaggttcacaccctgattggt
gccggcgccgctgaaggtgcgattgatgcggccaacatcctcaagccagctttggcacgg
ggtgagctgcagtgcatcggtgcaaccacactggatgaataccgcaagcacatcgagcgc
gatgccgccctagaacgccgcttccagccggtgatggtcggtgagcccagcgtcgatgac
acgatcgaaatcctgcgcggtctgcgtgagcgctacgagcagcaccacaagctaaaaatt
gccgatgaagcgttggaagcagctgccaagctggccgatcgctacatcagcgatcgcttc
ctacccgacaaggcgatcgacttaatcgacgaagcgggttcgcgggttcgcctgatgaac
tcgcaactgcctccggctgctaaagagttggataaagagctgcgtcaagtccttaaggac
aaagatgacgccgttcgctcccaggactttgataaggctggggaactgcgcgatcgcgaa
atggaaatcaaaacccaaattcgctcgatcgctcaaagcaagaaggccgacggtaccagc
agcacggatgattcaccgatcgtcaccgaagaggacatcgctcacatcgttgcctcttgg
acgggcgtgccggtcaacaagctgaccgagtcggaatcgaccaagctgctgaacatggag
gaaaccctccacagccgcttgattggtcaggacgaagccgtgaaagcggtgtcgcgggcc
atccgtcgtgcacgtgtcggcctgaaaaatcccaaccgtccgatcgccagcttcatcttt
agtggtcccaccggcgtcggtaagactgagctgaccaaagccttggcggcctacttcttc
ggcagcgaagaagccatgatccggcttgatatgtcggagtacatggagcgccacacggtc
agcaagctgatcggttcgcctccaggctacgttggctacaacgaaggcggccaactaacc
gaggccgtgcgtcgtcgtccctatactgtcgtcttgctggacgagatcgagaaagcccat
cccgatgtcctcaacctgctcttgcagttgctcgaggacggtcgtctgactgatgccaaa
ggtcggaccgtggacttcaaaaacaccctgatcattctgacttcgaacattggctcgaag
gtgattgagaaaggcggcggcggtctcgggtttgaattctctggtgtcgatgaggctgaa
aaccagtacaaccgcattcgctccctagtgaatgaggaactgaagcaatacttccgtcct
gagtttctgaaccgtctcgacgaaatcatcgtcttctgtcagctcaacaaggaagaagtc
aaagaaatcgccgacatcatgttgcgcgaagtcttcggtcggatgctcgagaaaggcatc
agcctctcagttaccgagaagttcaaagaccgcttggtggaagagggctacaaccccagc
tacggggctcgtcccctccgtcgggcaatcatgcgcctgctcgaagattccttggcggag
gagttcctctccggcaaactgcgggaaggtgacaccgccgtcgttgacattggtgaagag
ggcaaggttcaagttcttgcgcaagagaagcgtgagctactgcctcaagccgttgactaa

All links

Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   CYANOBASE-SYC (1)   
   CYORF-SYC (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (30)   
   Pfam (30)   
All databases (39)   

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