KEGG   Synechococcus elongatus PCC6301: syc2345_dHelp
Entry
syc2345_d         CDS       T00163                                 

Gene name
rpoD2
Definition
(GenBank) group2 RNA polymerase sigma factor RpoD2
  KO
K03087  RNA polymerase nonessential primary-like sigma factor
Organism
syc  Synechococcus elongatus PCC6301
Brite
Transcription machinery [BR:syc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     syc2345_d (rpoD2)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: Sigma70_r3 Sigma70_r2 Sigma70_r4 Sigma70_r1_2 Sigma70_r4_2 Tipalpha HTH_25 DUF1874 YycC
Motif
Other DBs
NCBI-ProteinID: BAD80535
CyanoBase: syc2345_d
CYORF: syc2345_d
UniProt: A0A0H3K5R7
Position
2499488..2500450
Genome map
AA seq 320 aa AA seqDB search
MSTSSAQYSPDLVRAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPS
KEEWAAAVDLNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTL
GLERGFEKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQREL
SQQLGRSATASELAEVLELPLEQVREYIQMNRQPVSLDVKVGDSQDTELQELLEDEQSSP
SDYVEQESLRRDLRNLMAELTPQQQAVIALRYGLDEGDSLSLAKVGERLNISRERVRKLE
RQAMDHLRRRSRLLAEYAAS
NT seq 963 nt NT seq  +upstreamnt  +downstreamnt
atgtctacctcctccgctcaatacagtcctgatttagtccgtgcttacctgcaagaaatt
ggccgggtgcggctgctgaccgctgaagaagagttgtgctttggccgacaggttcagcgc
ctgatgatgctcttggatgctcaaaccgagctgcgcgatcgcttggggcatgagcctagc
aaagaagaatgggctgctgctgttgacctgaatctcgaagatctcgatcgccaaattgag
caaggtcagcgggcgaaacgcaaaatgattgaggccaacctgcgcctcgttgtttcgatc
gccaagaaataccagaagcgtcacatggaattcttggatctcatccaagaaggcacactg
gggctggagcgtggtttcgaaaaattcgatccctccaaaggctacaagttctctacctac
gcctactggtggattcgccaagctattacccgtgcgatcgcccaacaatcccgcacgatt
cgtctgcctattcacatcactgaaaagctgaacaagctcaaaaaaacccagcgcgaactc
tcgcagcaattgggccgcagtgccacagcttcagagctggcagaagtgctggagctgcca
ctggagcaggtgcgggaatacatccaaatgaaccgccagccagtatcgctcgatgtcaaa
gtaggtgacagccaagacactgaattgcaggaactgctggaagacgagcagtcttcgccc
tcagattacgtggaacaagaatcgctacgccgcgatctacgcaatttaatggcagaactg
accccccagcaacaggccgtgattgccctgcgctacggcttggatgaaggtgacagtctg
tcgttggccaaagtcggcgaacgcctgaatatcagccgcgaacgcgtgcggaaactagag
cgccaagccatggatcacctacgtcgccgcagtcgtcttctggcggaatacgcagctagc
tag

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