KEGG T03783: Syncc8109

Synechococcus sp. WH 8109: Syncc8109_0114

Entry

Syncc8109_0114    CDS       T03783

Symbol

gyrB

Name

(GenBank) DNA gyrase, B subunit

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

syh Synechococcus sp. WH 8109

Brite

KEGG Orthology (KO) [BR:syh00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:syh03032]
    Syncc8109_0114 (gyrB)
   03400 DNA repair and recombination proteins [BR:syh03400]
    Syncc8109_0114 (gyrB)
Enzymes [BR:syh01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     Syncc8109_0114 (gyrB)
DNA replication proteins [BR:syh03032]
Prokaryotic type
  DNA Topoisomerases
   Syncc8109_0114 (gyrB)
DNA repair and recombination proteins [BR:syh03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      Syncc8109_0114 (gyrB)

SSDB

Motif

Pfam:

DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c TOPRIM_C DUF6507

Other DBs

NCBI-ProteinID:

AHF62534

UniProt:

W0GV83

Position

108203..110170

AA seq 655 aa
MSDASKVQNAYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGH
CDRILVVLGEDGSAAVSDNGRGIPTDVHPRTGKSALETVLTVLHAGGKFGAGGYKVSGGL
HGVGVSVVNALSEWVQVTVRRQGQVHRQRFERGAAIGELASESQPAAESGETGTTVCFKP
DLEIFTGGIVFDYATLSARLRELAYLNGGVRIVFRDERESARDEEGKPHEETYFYEGGIK
EYVAYMNKEKDALHPEIIYVNSEKDGVQVEAALQWCSDAYSDSILGFANNIRTVDGGTHI
EGLKTVLTRTLNAFAKKLGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGN
TEVRGIVDNLVGEALSQFLEFNPSVISLILEKAIQAFNAAEAARRARELVRRKSVLESST
LPGKLADCSSRDPGESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIY
KNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKELV
EGGYIYIACPPLYKVERGKNHTYCYNEGDLQKTLEGFGEKANYTIQRFKGLGEMMPKQLW
ETTMDPTTRTMKRVEIEDAIEADRIFTILMGDKVAPRREFIETHSAELDMAALDI

NT seq 1968 nt +upstreamnt +downstreamnt
atgagcgacgcttccaaggtccagaacgcctacggcgctgagcagattcaggtgctggag
gggcttgagcccgttcgcaaacgccctggcatgtacatcggctccactgggccgcggggt
ttgcaccatctggtgtacgaagttgttgataactcggttgacgaagccctagctggccat
tgcgaccgcattcttgtggtgctcggtgaagatggctccgccgcggtgagcgacaacggc
cgcggcatccccaccgacgtgcacccccggacgggcaagagcgccttggagacggtgctc
accgtgctccacgccggcggcaagtttggcgccggtggttacaaggtgtccggcggcctg
cacggcgtcggcgtgtccgtggtgaacgccctgagtgaatgggtgcaggtgacggtgcgc
cgacagggccaggtgcatcgccagcgttttgagcgcggtgctgcgatcggggaattggcg
tcggagtcgcagcctgcagccgagtccggcgagaccggcaccaccgtctgcttcaagcct
gaccttgaaatcttcaccggcggcatcgttttcgattacgccaccctttcggcccgactt
cgggaactggcttacctcaacggtggcgttcggatcgtgttccgcgatgagcgggagtcg
gcccgggatgaggaaggcaaaccccatgaggagacctacttctacgaaggcggcatcaag
gaatacgtcgcctacatgaacaaggagaaggatgcccttcaccccgagatcatctacgtg
aattcggagaaggatggcgttcaggttgaggctgctctgcagtggtgctccgacgcctat
tccgacagcattcttggctttgccaacaacatccgcaccgtggatggcggcacccacatc
gagggcctgaagacggtgctcacccgcaccctcaacgccttcgccaagaagctgggcaaa
cgcaaggaatccgattccaacctggcgggggagaacatccgggaaggcttgacggcggtg
ctctcggtgaaggtgccggaaccggaatttgagggtcagaccaagaccaagctcggcaac
accgaggtgcgcggcattgtcgacaacctggtgggtgaagccctcagccagttcctcgag
ttcaatccctccgtgatcagcctgatcctggagaaggcgatccaggcgttcaatgccgct
gaagccgcccgccgggcccgcgaactggtgcggcgcaagagcgtgctggagagctcaacc
ctgcccggaaaactggccgactgcagctcccgcgaccccggcgaatccgagatttacatc
gtggagggcgactccgctggtggctccgccaagcagggtcgcgaccgtcgcttccaggcg
atcctgccgctgcggggcaagatcctcaacatcgagaagaccgacgacgccaagatctac
aagaacacggagatccaggcgctgatcacggccctgggcctgggcatcaagggtgaggac
ttcgacgtgaagaacctccgttaccatcgggtcgtgattatgaccgacgccgacgtggac
ggcgcccacatccgcaccctgctgctcaccttcttctaccgctaccagaaggagctggtg
gagggcggttatatctacatcgcctgcccgccgctctacaaagtggagcgcggcaagaac
cacacctattgctacaacgagggcgatcttcagaagacccttgagggcttcggagagaag
gccaactacacgatccagcgcttcaagggtcttggcgaaatgatgcccaagcagctctgg
gaaaccaccatggatcccaccacgcgcacgatgaagcgggtggagatcgaggatgccatc
gaggccgatcgcatcttcacgatcctgatgggcgacaaggtggcgccccgccgggaattc
atcgaaacccacagcgccgagctggacatggcagccctcgacatttga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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