KEGG Synechocystis: sll1787

Synechocystis sp. PCC6803: sll1787

Entry

sll1787 CDS Synechocystis

Gene name rpoB

Definition DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)

Orthology K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]

Pathway syn00230 Purine metabolism
syn00240 Pyrimidine metabolism
syn01100 Metabolic pathways
syn03020 RNA polymerase

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:syn00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:syn00240]
Genetic Information Processing; Transcription; RNA polymerase
[PATH:syn03020]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7
RNA_pol_Rpb2_3 RNA_pol_Rpb2_45
PROSITE: RNA_POL_BETA

Other DBs NCBI-GI: 16329957
NCBI-GeneID: 953988
CyanoBase: sll1787
CYORF: sll1787
UniProt: P77965

Position complement(857558..860866)

AA seq 1102 aa
MTNLATTMLPDLIEIQHASFHWFLEEGLIEELNSFSPISDYTGKLELHFLGKDYKLKQPK
YDVDESKRRDASYSVQMYVPTRLINKETGEIKEQEVFIGDLPLMTERGTFIINGAERVIV
NQIVRSPGVYYKKELDKNGRRTYSASLIPNRGAWLKFETDKNGLVYVRIDKTRKLSAQVL
LKAIGLSDNEILDSLSHPEFYQKTLDKEGNPTEEEALVELYKKLRPGEPPTVSGGQQLLE
SRFFDPKRYDLGRVGRYKLNKKLRLNEADTTRVLTPQDILAAINYLINLEFDVGTTDDID
HLGNRRVRSVGELLQNQIRVGLNRLERIIRERMTVSESDALTPASLVNPKPLVAAIKEFF
GSSQLSQFMDQTNPLAELTHKRRISALGPGGLTRERAGFAVRDIHPSHHGRICPVETPEG
PNAGLIGSLATCARVNDYGFIETPYFRVESGRVRKDLDPVYLTADEEDDMRVAPGDIPTD
EEGNIIGESVPIRYRQEFSTTSPEQVDYVAVSPVQIISVATSMIPFLEHDDANRALMGSN
MQRQAVPLLRPERPLVGTGLEAQAARDSGMVIVSRTHGIVTYVDATEIRVQPHSPDNPAE
KGEEIVYPIQKYQRSNQDTCLNQRPLVYAGEDVVPGQVLADGSATEGGELALGQNILVAY
MPWEGYNYEDAILISERLVYDDVYTSIHIEKFEIEARQTKLGPEEITREIPNVGEDALRN
LDEHGIIRIGAWVESGDILVGKVTPKGEADQPPEEKLLRAIFGEKARDVRDNSLRVPNGE
KGRVVDVRVFTREKGDELPPGANMVVRIYVAQKRKIQVGDKMAGRHGNKGIISRILPIED
MPYLPDGRPIDIALNPLGVPSRMNVGQVFECLLGWAGENLGVRFKITPFDEMYGEEASRD
TVHGLLEEASQRPNKDWVFNENHPGKIQVFDGRTGEPFDRPITVGQAYMLKLVHLVDDKI
HARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAYGAAYILQELLTVKSDDMQGRNE
ALNAIVKGKSIPRPGTPESFKVLMRELQSLGLDIAAHKVQLSEDGESADAEVDLMIDSQR
RAPNRPTYESLHTEEDLEEEEV

NT seq 3309 nt +upstreamnt +downstreamnt
atgacaaaccttgccaccacgatgttgcccgatttaattgaaatccaacacgctagtttc
cactggtttttggaggaaggtttaatcgaggaattgaatagtttttcgccgatttctgac
tacacaggcaagctggaactccactttttgggcaaagattacaagctcaaacaacccaag
tatgatgttgatgaatccaagcgacgggatgctagttattcggtgcagatgtatgtgccg
acccgtctgattaacaaagaaaccggggaaattaaggagcaggaagtcttcatcggcgat
ctccccctaatgacagagcggggaaccttcatcatcaatggtgcggagcgggtcatcgtt
aaccaaattgtgcgatcgccaggggtttactacaaaaaagaattagataaaaacggtcgc
cgcacctattccgcttccctgatccccaaccggggggcctggctgaaatttgaaactgac
aaaaatggtctagtctatgtccgcatcgacaagacccgtaaattgtcggctcaagtgctc
ctaaaggcgatcggtctgagcgataacgaaattctcgactccctcagccacccagagttt
tatcaaaaaaccctcgacaaagaaggcaatcccaccgaagaggaagctttggtggaactg
tacaaaaaacttcgccccggtgagccccccaccgttagtggtggtcaacagttattggag
tcccgcttcttcgaccccaaacgctatgaccttggtcgagtgggacgatacaaactcaat
aaaaaactccggctcaatgaagcggacaccacccgggtgcttaccccccaagacatcctg
gccgccatcaactatctgattaatctggaatttgacgtcggcaccaccgatgacatcgac
cacttgggcaatcgacgggtacgttccgttggagaactattgcagaaccaaattcgggtt
ggcttaaatcgcctggaacggattattagggaacgcatgaccgttagcgaatccgatgcc
cttacccctgcttccttggtgaatcccaagcctctagtggcggccatcaaggaattcttt
ggttcctcccaactgtcccagttcatggaccaaaccaatcccctggcggagttgacccac
aaacggcgtatttctgccctcggccctgggggtctaacccgggagcgggccggttttgcg
gtgcgggatattcacccttcccaccacggccgtatttgcccagtggaaacgccggaaggc
cccaatgccggtttgatcggttccttagctacctgtgcccgggtcaatgattacggtttc
attgaaaccccctattttcgggtggagagtggtcgagtcaggaaagatttagaccccgtt
tacctcaccgccgacgaagaagacgacatgcgggtggcccccggggacattcccacagac
gaagagggcaacatcattggcgagtcggtacctattcgctaccgccaggaattttccacc
accagcccagaacaagttgactatgtagccgtttccccggtgcaaattatttccgttgcc
acctccatgatccccttcctggagcatgacgatgctaaccgggccctaatgggctccaac
atgcaacggcaggcagtgcccctgttgcgtcctgaacggcccttggtcggtacaggcttg
gaagcccaagctgctcgcgactccggcatggtaattgtttcccgtacccatggcattgtc
acctatgtggacgccaccgaaattcgggtgcagccccactcccccgataaccctgcggag
aaaggggaagaaatcgtttacccaatccaaaaataccaacggtctaaccaagatacctgt
ttaaaccaacggccccttgtttatgccggggaagatgtggtgcctggtcaagtgctagcg
gacggttccgccacggaagggggagagctggccctgggccaaaacattctcgtagcctat
atgccctgggagggttacaactacgaagacgccattctgatcagtgaaaggttagtctat
gacgatgtttacaccagtatccacatcgaaaaatttgaaattgaagcccgtcaaaccaag
ctaggacccgaagaaatcaccagggaaatccccaacgtcggggaagatgccctgcgaaat
ctggatgaacatggcattatccgcatcggtgcttgggtggaatccggcgatatcctggtg
ggtaaagtcactcccaaaggggaagcagatcaaccccccgaagaaaaactgctgcgggct
attttcggtgaaaaagctcgggacgtgcgggacaactcgctacgggtacccaacggtgaa
aaaggtcgggtagtggatgtgcgagtgttcacccgggaaaaaggagacgaattacccccc
ggtgccaatatggtggtgcggatttacgtagcccaaaaacggaaaatccaagtgggagac
aaaatggccggtcgccacggcaataaagggattatttcccgcattttgcccatcgaagat
atgccctatctccctgatggtcgccccattgacattgcccttaatcccctgggggttcct
tcccggatgaacgtaggtcaggtgttcgaatgcttgctgggttgggctggggaaaacctt
ggtgtgcgcttcaaaattacccccttcgatgagatgtacggggaagaagcgtcccgggat
acggtccatggcttgttggaagaagcctcccaacggccgaacaaagactgggtatttaac
gaaaaccaccccggcaaaatccaagtgttcgacggccgcaccggggaaccctttgaccgt
ccgattaccgttgggcaagcttatatgctcaaactggtgcatttggtggacgataaaatc
cacgcccgttccaccgggccctactccttggttacccaacagcctttggggggtaaagcc
caacaggggggacagcggttcggagaaatggaagtgtgggccctggaagcctacggcgcc
gcctacattttgcaggaactactcaccgttaaatccgatgacatgcagggtcgtaacgaa
gccctcaatgccattgttaaaggcaagagtattccccggcccggtaccccagaatccttc
aaggtgttgatgcgggaactacaatcccttggtttggacattgccgcccacaaagtacaa
ctgtccgaagatggtgaaagcgccgatgcagaagtagatttgatgatcgacagccagcgt
cgggcccccaatcgtcccacctatgagtccctccacaccgaggaggatttggaagaagaa
gaagtgtag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   CYANOBASE-SYN (1)   
   CYORF-SYN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (6)   
   PROSITE (1)   
All databases (23)

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