KEGG Synechocystis: sll1789

Synechocystis sp. PCC6803: sll1789

Entry

sll1789 CDS Synechocystis

Gene name rpoC2

Definition DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)

Orthology K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]

Pathway syn00230 Purine metabolism
syn00240 Pyrimidine metabolism
syn01100 Metabolic pathways
syn03020 RNA polymerase

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:syn00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:syn00240]
Genetic Information Processing; Transcription; RNA polymerase
[PATH:syn03020]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_3 Apocytochr_F_C
Biotin_lipoyl DUF2078
PROSITE: ASP_RICH

Other DBs NCBI-GI: 16329956
NCBI-GeneID: 953987
CyanoBase: sll1789
CYORF: sll1789
UniProt: P73334

Position complement(853497..857450)

AA seq 1317 aa
MTFYNYTIDKGRLKKLIALAYRRYGSARCSQLADELKELGFRFATKAGVSISVDDLTIPP
EKKQMLEAAEKEIRTTEERYARGEITEVERFQKVIDTWNGTSEELKDQVVVNFRKTDPLN
SVYMMAFSGARGNMSQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEYVISSYGAR
KGLVDTALRTADSGYLTRRLVDVSQDVIVREQDCGTERSLRVTAMTDGDQVKISLADRLF
GRLLAKDVVGPDGEIIAKRNDEIDEALANRIAAVTDEVYVRSPLTCEAARSVCQNCYGWS
LAHGHKVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVARQEKAPEDGTVKWGKG
LSTRKVRTRHGEDAEQVEIAGDLIWKGEGKKAATQTYSLTPGSLLFVQDGQTVTAGQLMT
EISLSKTQRSTERATKDVAGDLAGEVLFDRLVPEEKTDRQGNTTRIAQRGGLVWILSGEV
YNLPPGAEPVVKNDEQVEVGSIMAETKLVTNDGGVVRLVSNREIEIITASVLLDQAQVKL
ESSGGREQYVIYTADKQRFLLKAAPGTKVQNHSIVAELIDDRYRTTTGGMIRYAGVEVAK
GGRKQGYEVTKGGTLLWIPEETHEINKDISLLIVEDGQYVEAGTEVVKDIFCQSSGIVEV
VQKNDILREIIIKPGDFYQDVDPGSVKIESGQLLQPGQDVFPGVTVSTLSQAEWIESPEG
NGLLLRPVEEYKVFDEPAAPSQGSQNEEGGRQIELRSVQRLFYKDGDRVKSVEGAPLLST
QLVLEIYGSGNEGISHLSADIELQDDEEEDCQRLQLVILESLVLRRDQESDPLGGASKTR
LLVQDGDQIPPGAVVARTEIQCKEAGTVRGIKEGQESIRRVLLERAADRLVVDLPSAPEV
KPGQLLVAGQELVPGVKLEESGKVLEINGKGDNYQLVLRRARPYRVSPGAVLHIEDGDLV
QRGDNLVLLVFERAKTGDIVQGLPRIEELLEARKPKEACVLARAPGVCQVEYLEDESVDI
KVVEDDGTVSEYPLLPGQNAMVTDGQRIDVGHALTDGYNNPHEILDVFFSYYVDKDGCYQ
AALRGLQAAQKFLVNEVQTVYQSQGVDISDKHIEVIVRQMTAKVRIDDGGDTTMLPGELV
ELRQVEQVNEAMGITGSAPARYTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGK
SDWLRGLKENVIIGRLIPAGTGFSSHEEVLGLIETQDDIQGYMIEPIELPTTKKKASATK
VKTKKVEADDDLLDDTRARAYAGTQLSQDDEEFEETYDTDEDDFDMDDDDDFGDDED

NT seq 3954 nt +upstreamnt +downstreamnt
atgacgttttataactacaccatcgacaaaggccgcctgaaaaaactcattgcccttgcc
taccgtcgttacggttctgcccgctgttcacagttggctgatgaactgaaggaactgggg
tttcgttttgccaccaaagcgggggtttccattagtgtagatgacctaactattcctcca
gagaaaaagcaaatgctggaggcggcggaaaaggaaattcgcaccacggaggaacgctat
gctcggggggaaatcaccgaggtagaacggttccaaaaggtaattgatacctggaacggt
acttcggaggagttgaaggatcaggtggtggttaacttccgcaaaaccgatcctctcaac
tccgtctatatgatggctttctccggtgcccgggggaacatgagccaggtgcggcaattg
gtggggatgcggggcttgatggcggatccccagggggaaattatcgacttgcccattaaa
accaatttccgggaaggactgacggttactgagtatgtaatttcttcctatggtgcccgc
aagggtctggtggacacggctctgcggacggcggattctggttacctcacccggcgtttg
gtggacgtttcccaggacgtaattgtgcgggaacaggattgtggcaccgagcgcagtcta
cgggtcaccgccatgaccgatggggaccaggtaaaaatcagcttggccgatcgcctgttt
ggtcgtttgctggctaaggatgtggtgggcccggacggagaaattattgccaaacggaac
gatgaaattgacgaagccttggcaaaccgcattgccgccgtcaccgatgaggtttatgta
cgatcgccgttgacctgtgaagcggcccggtccgtgtgccaaaactgctacggctggagc
ttggcccatggtcacaaagttgacctaggggaagcggtaggcattatcgccgcccaatcg
atcggggaacccggcacccagttgaccatgcggactttccacactgggggggtattcacc
ggggaagtggcccgccaagagaaagcgcccgaagacggcaccgtcaaatggggtaaaggt
ttaagcacccgtaaagtccgtacccgccacggggaagatgcggagcaggtggaaattgcc
ggggatttaatctggaaaggggaaggcaaaaaagctgccacccaaacctactccctcacc
cccggttccctactgtttgtgcaggatggacagacggtgacagcggggcagttgatgacg
gaaatttccctctccaaaacccaacgttccacggagcgggccaccaaggacgtagctggg
gatctggccggagaagtgctgttcgatcgcctggtgccggaggaaaaaactgaccgtcag
gggaacaccacccgcatcgcccaacggggtggtctagtctggatcctttccggggaagta
tataacttaccgcctggggcagaacccgtggtgaaaaatgacgagcaggtggaagtaggc
agcatcatggccgaaaccaagctggtcaccaacgacggtggggtggtgcgccttgtgagt
aaccgggaaattgaaatcatcaccgcctctgtgctgttagatcaagcccaggtcaagctg
gaaagtagtggcggccgggaacaatacgttatctacacggccgataagcaacgcttcctg
ctcaaagccgctcccggtaccaaagtgcagaaccacagcattgtggcggaattaatcgac
gaccgttaccgtaccaccaccgggggcatgattcgctatgccggcgtggaagtggctaag
ggcggccgcaaacaaggctatgaagtcactaaagggggtaccctgctctggattcccgaa
gaaacccacgaaattaacaaagatatttccctgttaattgtggaagatggccagtatgtg
gaagcgggcacggaagtggtcaaggacattttctgccaatccagcggcatcgttgaagtg
gtgcagaaaaacgatattctgcgggaaattattatcaaacccggtgacttctaccaagat
gtggaccccggttcggtgaaaattgaaagcggccagttgctgcaaccagggcaggatgtt
ttccccggtgttaccgttagcaccctcagccaggccgaatggattgaaagtcccgaaggc
aatggtttgctgctacgccccgtggaagagtacaaagtatttgatgagcccgccgccccc
tcccagggttcccaaaacgaagaagggggccgccagattgaattgcgctcagtgcaacgt
ctattctataaagacggcgatcgggttaaatccgtcgaaggggcccccctgctcagcacc
caattggtgttggaaatttatggcagtggtaacgaaggtatttcccacctttccgccgat
attgaactccaggacgacgaagaggaagattgccagcgcttacagttggtgattttagaa
tctttggtactacgccgggaccaggaatccgatcccctcggcggagcctccaaaacccgc
ttactggtgcaagatggcgaccaaattccccccggagcggtggtggctcgtaccgaaatt
caatgtaaggaagcgggcactgtgcggggtatcaaggaaggacaggaatccatccgccgg
gtgttactggaacgggcagcagatcgcctggtggtggatctgccaagtgccccggaagtc
aaaccaggacaactcttggtggcagggcaggaattggtgcccggggtcaaactggaggag
tccggcaaagtcctggaaatcaacggcaaaggggacaactatcagttagtgttacgccga
gcccgaccctatcgggtttcccctggggcagtgctccacatcgaagacggcgacctggtg
caacggggggataacctcgtgctgctggtgtttgagcgggctaaaaccggggatatcgtc
cagggtttaccccggattgaagaactgttggaagcccgtaaacctaaagaagcctgcgtc
ctggcccgggcccctggggtctgtcaggtggaatacctggaagatgagagtgtcgacatc
aaagtggtggaagacgacggcaccgtgagcgaatatcccctgttaccgggacaaaacgcc
atggtcaccgacggacaacgcattgacgtaggccacgccctcaccgatggctacaacaat
ccccacgaaattttggatgtgttcttcagctactacgtggacaaggacggttgttaccaa
gcggccctgagaggactgcaagcggcgcaaaaattcctcgtcaatgaagtgcaaacggtt
tatcaatcccaaggggtggatatttctgacaaacacattgaggtaattgtgcggcagatg
accgccaaagtccgcattgatgatgggggagacaccaccatgctcccaggggaattggtg
gaattacgccaagtggaacaggttaatgaagccatgggcatcactggtagtgctccggcc
cgctatactcctgtattgcttggtatcaccaaagcttctttgaataccgatagtttcatc
agtgcggcttccttccaagaaaccactcgggtgcttaccgaagcggcaatcgaaggcaag
tccgattggttacggggcctgaaggagaacgtgatcattggtcgtcttattcctgcgggt
actggcttcagtagccatgaggaagtgttgggattgattgaaacccaggacgatattcaa
ggctatatgattgagccaattgaattaccaacgacgaagaaaaaggctagcgccaccaag
gtgaaaactaaaaaagttgaagccgatgacgaccttttggacgacactagggcccgggcc
tatgccggcactcaactcagtcaggatgacgaagagtttgaagaaacctacgacaccgat
gaggatgatttcgatatggatgacgatgacgattttggggatgatgaggattaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   CYANOBASE-SYN (1)   
   CYORF-SYN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (6)   
   PROSITE (1)   
All databases (23)

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