KEGG T00523: SynRCC307

Synechococcus sp. RCC307: SynRCC307_1018

Entry

SynRCC307_1018 CDS T00523

Gene name

lig

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

syr Synechococcus sp. RCC307

Pathway

syr03410	Base excision repair
syr03420	Nucleotide excision repair
syr03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:syr03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:syr03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:syr03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme HTH_31

Other DBs

NCBI-GI:

NCBI-GeneID:

CyanoBase:

CYORF:

UniProt:

Position

complement(931272..932879)

AA seq 535 aa
MRRFQQLLQGLDRTTGTSAKQQLLENYFRQAPAADAAWGLELLLGKRRRRLITGRRLRQV
AQQLSGLPPWLFDDCHAQVGDSAETVALTLPAGNKQAVDQPLHQWMECSLPDLAALDSER
QDKALAALWDGLCQDDIYLLSKLLSGGFRVGVSSGLVQKALAGAAGVEPSTIAQRLMGGI
EPSAATFEQLISSEAEAGGPPPGRPYPFFLASPWDKGNAPPWQADHWQTEWKWDGIRAQL
IRRQGEVFLWSRGEELINQSFPDVVQLAEQLSDGTVLDGELLVWPTGGDQPQDFGSLQRR
LGRKSPGRSLLADCPAALISYDLLEAGGEDLRSQPLRQRRQQLEAMAQNWTGNLRLSATL
TIASWEALEQWRSQARTHAAEGLMLKALDSPYLEGRKRGHWWKHKLDPLSLDAVLIYAQA
GSGRRANLFTDYTFALWNAELTPQLVTFAKAYSGLNDQEINELDRWIRRNTLQRFGPVRA
VKPEQVFEIGFEGIHASSRHKSGIAVRFPRILRWRQDKPAGEADTLQTAEALLQQ

NT seq 1608 nt +upstreamnt +downstreamnt
atgcggcgctttcaacagctgttgcaagggctcgatcgcaccacgggcaccagcgccaag
cagcaactgctggagaactatttcaggcaagcgccagcagctgatgccgcttggggactg
gagttgttgctgggcaaacgccgccggcgtctgatcactggccggcgcctacggcaggtg
gcccagcagctcagcggcctgccgccatggctgtttgacgactgccatgcccaagtgggt
gatagcgctgaaacggttgctctcacgctgccggctggcaacaagcaggccgtcgaccaa
ccactgcatcaatggatggagtgcagcctgcctgacctggcggcactcgatagcgagcgg
caagacaaggcattggcggcgctttgggatgggctctgccaagacgacatttacttgctg
agcaagctgctaagtggtggctttcgcgtgggggtcagcagcggtttggtgcagaaagcc
ctggcgggggcagctggcgtggagcccagcaccatcgcccagcgcttgatgggcggcatc
gagccaagcgcagccacctttgagcaactgatcagttcagaagccgaagctggtggtccg
ccgcctggtcgcccctatccattttttctggccagcccctgggacaaaggcaacgccccg
ccatggcaagccgatcactggcaaacggagtggaagtgggatggcattcgcgcccaactg
atccgccggcagggtgaggtttttctttggagccgcggcgaggagctgatcaatcaatcc
ttccccgatgtggtgcagctggctgagcagctcagcgacggcaccgtgctcgatggcgag
ctgctggtgtggccaaccggcggtgatcaaccacaagacttcggctcactgcaacgccgg
cttggccgcaagagtccaggccgcagcttgctagccgattgccccgcggccttaatcagc
tacgacctactcgaagccggtggcgaggacctcagaagccaaccgctgcggcaacggcgc
caacagctcgaggccatggcccagaactggaccggcaacctgcggctgtcggcaacgttg
acgatcgcgagctgggaggccctggagcagtggcgatcacaggcccggacccatgccgcc
gaaggattgatgctcaaggcgttggactccccctacctggaggggcgcaagcgagggcat
tggtggaagcacaagctcgatcccctcagcctggatgccgtgctgatctatgcccaagcc
ggcagcgggcggcgcgccaacctgttcaccgactacacctttgcgctttggaatgctgag
ctcaccccccagctggtgacctttgccaaggcctactccggcctcaacgatcaagagatc
aatgaactcgaccgctggatccgccgcaacaccctgcagcgctttggcccggtgcgagcc
gtgaaaccggaacaggtgtttgaaattggctttgaggggatccatgcctcaagccgccac
aaatccggaatcgcggtgcgctttccgcgcatcctgcgctggcgccaggacaaacctgcc
ggcgaagccgacacgctgcaaaccgcggaggcattgctgcagcaatga

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   CYANOBASE-SYR (1)   
   CYORF-SYR (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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