KEGG   Synechococcus sp. RCC307: SynRCC307_1557
Entry
SynRCC307_1557    CDS       T00523                                 
Symbol
recD
Name
(GenBank) Exodeoxyribonuclease V alpha chain
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
syr  Synechococcus sp. RCC307
Pathway
syr03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:syr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    SynRCC307_1557 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:syr03400]
    SynRCC307_1557 (recD)
Enzymes [BR:syr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     SynRCC307_1557 (recD)
DNA repair and recombination proteins [BR:syr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     SynRCC307_1557 (recD)
SSDB
Motif
Pfam: AAA_19 AAA_30 UvrD_C_2 Viral_helicase1 AAA_11 AAA_16 PIF1 AAA_5 PhoH SLFN-g3_helicase UvrD-helicase AAA_22 TrwB_AAD_bind nSTAND3 ResIII TsaE AAA_7 T2SSE Flavi_DEAD Rad17 SH3_13 Helicase_RecD AAA_28
Other DBs
NCBI-ProteinID: CAK28460
CyanoBase: SynRCC307_1557
UniProt: A5GUA1
Position
1375133..1376566
AA seq 477 aa
MSEASRCQRAAARLLSLAPAAVQAEAKGLQPLLERLLLCQLQGREPLQLDAAERAELTAA
SQSALQQLPVVLVEQGAQGAELWSRRQHQQQQSLLMELEQRLHQHRGLLLTGGAGTGKTT
RVRELLADERERHTLLLAPTGKAAARLREALSPLPASMQCSTLHRALEANPSGGFGRNQQ
RPINAEVVVVDEVSMVDTQLMQALLEALPSNTRLVLVGDSAQLPPIGGSSVLEPLEQQLK
QHRPQLLLQLERSHRFNDSTALGGFVQQLRGGSPTAELQQQLAAKAEHSNLHWWPLEQGW
PLALQQRIEQHRQRLEQQAHNTALSDAEALACLEDLLVLSPRRSGRQGVSQLNRRWLPLT
QREPWHWPAGTPLLVGRNDASLGLANGDRGLVRPGPQGQEAVIATAEGPRRLPLELLPCP
EPALALTVHKSQGSQAREVIVVLPAGSGLDRRLLYTALTRAQERLDLLSPPLDSLEA
NT seq 1434 nt   +upstreamnt  +downstreamnt
atgagcgaagccagtcgctgccagcgggctgctgcccgactcctgagcctggccccagcc
gcggtgcaggcggaagccaaaggcttacaaccactgctcgaacgcttgctgctctgccaa
ctccagggccgtgaacccttgcagctcgatgcagccgaacgcgctgaactcacggcggcc
agccaatccgccctgcagcagctacccgtggtgctggttgagcagggcgcgcaaggcgct
gaactctggagccggcggcaacaccagcagcagcagagcctgctgatggagttggagcaa
cggctgcatcaacacaggggactgctgctcaccggcggcgccggaacgggcaaaaccacc
cgcgtcagggaactgctcgctgatgagcgtgaacgccacaccctgctgctggcaccaacc
ggcaaggcagcggcacggctgcgggaagccctcagcccgctgccagcctcgatgcagtgc
tccaccttgcatcgcgccttggaagccaatcccagcggtggttttggccgcaaccagcag
cgccccatcaatgccgaggtggtggtggtcgatgaggtgtcgatggtggacacccagttg
atgcaagccctgctggaggcgctgccgagcaacaccaggcttgtgttggtgggtgattcc
gcccaattgccgcccattggcggcagcagcgtgctggaaccgctcgaacagcagctcaag
caacaccggccgcagctgctgttgcagctggagcgctcccatcgcttcaacgactccaca
gctctggggggctttgtgcaacagctgcgcggaggcagccccaccgctgaactacagcaa
caactggctgccaaagctgagcacagcaacctgcattggtggccgcttgagcagggatgg
cccctggccttgcaacagcgcatcgagcagcaccgccaacggctggagcaacaggcccac
aacacggctctcagtgatgccgaggccctggcctgcctcgaggacttgctggtgctctcg
ccacggcgcagtggccgtcagggggtgagccaactgaaccgccggtggctgcctctcacc
caacgggagccctggcattggcctgcgggcacccccctgctggtggggcgcaacgatgcc
tccttggggctcgccaatggtgaccgcggcctggtgcggcctggcccgcagggacaagag
gccgtgatcgccacggccgaaggccccaggcggctgcctttggaactgttgccttgcccc
gaaccagcccttgccctcacggtgcacaaaagccaaggcagccaggctcgcgaggtgatc
gtggtgctgccagcgggcagcggcttggatcgccgcttgctctacacggctctaacgcgg
gcccaagagcggctggacttgctgagtccgccgttagacagcctcgaggcgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   CYANOBASE (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (23)   
   Pfam (23)   
All databases (34)   

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