KEGG   Synechocystis sp. PCC 6803 GT-S: SYNGTS_2968
Entry
SYNGTS_2968       CDS       T02098                                 
Symbol
rpoDI
Name
(GenBank) RNA polymerase sigma factor
  KO
K03086  RNA polymerase primary sigma factor
Organism
syy  Synechocystis sp. PCC 6803 GT-S
Brite
KEGG Orthology (KO) [BR:syy00001]
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    SYNGTS_2968 (rpoDI)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:syy03021]
    SYNGTS_2968 (rpoDI)
Transcription machinery [BR:syy03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     SYNGTS_2968 (rpoDI)
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r3 Sigma70_r4 Sigma70_r1_2 Sigma70_r4_2 BDHCT_assoc
Other DBs
NCBI-ProteinID: BAK51716
Position
3322091..3323368
AA seq 425 aa
MTQTKEPLTKAESAELEQEIELSQYINTDDIDDDDIDVEDLEQEVAATEGKEKKVRKIRK
DAVKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARQIADLLELELIRDNLTLQLERQPS
ELEWGKQVWKLETAKQRLVGDKKKEPKKKDIDSYLANPDNELSLENEWSQQPNKNFAAFR
RRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK
FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEK
MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEVSKNLLREDLENV
LDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSIL
KEYIR
NT seq 1278 nt   +upstreamnt  +downstreamnt
atgacccagacgaaagagccactcaccaaagctgaatccgccgaactggagcaagaaata
gagctaagtcaatacattaacactgatgatattgacgacgatgatattgacgtagaggat
ttagaacaggaagtcgccgctacagaagggaaggaaaaaaaagtccggaaaattcgtaag
gacgcggttaaaaagaaaccctacaccgaagactcaatccgtatctatctccaggaaatt
ggccggattcgtctgctcagggccgaagaagaaattgaactagcccgtcaaattgccgac
ctcctcgaactcgagctaattcgggacaacctcacccttcaactagaacgccagccctcg
gaactggaatggggtaaacaggtctggaagttggaaaccgccaaacaacggttagtaggc
gacaagaaaaaagagccgaaaaagaaagatatagatagttacctcgccaatccagacaac
gaattaagtctggaaaatgaatggagccaacagcccaacaaaaattttgccgccttccgt
cgtcgtctttttctggatcgccgagccaaagacaaaatggtgcagtctaacctgcggcta
gtagtgtccattgccaaaaaatatatgaatcggggtctatcattccaagatctaattcag
gaaggttctctaggtttaatccgagctgccgaaaaatttgaccacgaaaaaggttacaaa
ttctccacctatgccacctggtggattcgccaagccatcacccgggcgatcgccgaccaa
tctcgcaccatccgcctccccgtccacctctacgaaaccatctcccgcatcaaaaaaacc
accaaactcctctcccaggaaatgcgacgtaaacccaccgaggaagaaatcgccgaaaaa
atggagatgaccatcgaaaaattacgcttcatcgccaaatccgcccaacttcccatctcc
ctcgaaacccccattgggaaagaagaggactcccgcctaggggacttcatcgaagccgac
ggcgaaacccctgaggatgaagtatccaaaaatctgctccgggaagacctggaaaatgtc
cttgacaccctcagcccccgggaacgagacgtattgcgtctacgctatggcctcgacgac
ggccgcatgaagaccctagaagagattgggcaaatctttaacgtcacccgggaacgcatc
cgtcagatcgaagctaaagccctgcggaaactgcgtcaccctaaccgcaacagcatcctc
aaggaatatatccgctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (12)   

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