KEGG   Synechocystis sp. PCC 6803: MYO_124810
Entry
MYO_124810        CDS       T02468                                 
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor
  KO
K03087  RNA polymerase nonessential primary-like sigma factor
Organism
syz  Synechocystis sp. PCC 6803
Brite
KEGG Orthology (KO) [BR:syz00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:syz03021]
    MYO_124810 (rpoD)
Transcription machinery [BR:syz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     MYO_124810 (rpoD)
SSDB
Motif
Pfam: Sigma70_r3 Sigma70_r2 Sigma70_r4 Sigma70_r1_2 HTH_28 Sigma70_r4_2 LexA_DNA_bind Stonustoxin_helical
Other DBs
NCBI-GeneID: 14617903
NCBI-ProteinID: AGF52711
Position
complement(2728828..2730042)
AA seq 404 aa
MTKPSNDEPPLTNVRDLEAMLPLEEEDLTADSQDLEYTAVAHRQQFSTDLVRLYLQDIGR
IPLLKRDEEVHIAQQVQSYLRLVEIQNRAAESDAAIDQYQTAIAVHDQLLVQLGHRPSYE
RWAKILGQTVATLKQTLKSGKKRWAELAGLTVEELENIEKQGITAKAHMIKANLRLVVSV
AKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYSYWWIRQGITRAIATQSRMI
RLPVHITEKLNKIKRAQRKISQEKGHTPKIDEVAEELGMTPEQVREVLTQVPRSVSLELK
VGQDKDTELMDLLETDTQSPEDELMREALQNDMQEILLDLTPREQEVIALRFGFQDGVAH
SLSEIGRILNLSRERVRQIEAKALQKLRHPRRRDRIRDYYENLG
NT seq 1215 nt   +upstreamnt  +downstreamnt
atgactaaaccaagcaacgatgagccgccactgactaatgtacgagatttggaagctatg
ttgccgctggaggaagaggatttaacggcagactcccaggatttggaatacaccgctgta
gcccatcgtcagcaatttagtactgatttagtgcgcctttacctccaggatattggtcgc
attcccctgttgaagcgagatgaagaggtgcacatagcccagcaggtgcaaagctatctc
cgcctagtggaaatccaaaatcgggccgcagaatccgatgctgccattgaccaataccaa
acggcgatcgccgtccacgatcaacttttagtccagttgggtcatcgtccttcctatgaa
cgttgggccaaaatcctcgggcaaaccgtagcgacccttaagcaaaccctcaaaagcggt
aaaaaacgatgggcggagttggcggggttgacggtggaagaattagagaatattgaaaag
cagggcattacggccaaagcccacatgatcaaagccaatttaaggctagtggtttccgtc
gccaagaaataccaaaatcggggcttggaacttttagatctgatccaagagggcaccctg
gggttggagcgggcggtggaaaaatttgatcccaccaagggttaccgctttagcacctat
tcctactggtggattcgtcagggcatcaccagggcgatcgccacccagagtcgtatgatt
cgtttgccggtgcacatcaccgagaagttaaataaaatcaaacgagcccagcggaaaatt
tcccaagaaaagggccacactccgaaaattgacgaagtggcggaagaattaggcatgacc
ccggagcaggtgcgggaagtgctgacccaagtgccccgttccgtctccctagaactcaag
gtggggcaggataaggatacggagctaatggatttactggaaaccgacacccagtcgccg
gaggatgaattgatgcgggaggctctccagaatgacatgcaggaaattttgctagatttg
acccccagggaacaggaagtaatcgccctgcgctttggttttcaagacggcgtagcccac
tccctatctgaaattgggcgtattttgaatttatcgagggaaagggtacgacagattgaa
gctaaggctctgcaaaagttgcgccatccccgccgccgggaccgcatccgggactattac
gaaaatttgggttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (15)   

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