KEGG   Siansivirga zeaxanthinifaciens: AW14_03035
Entry
AW14_03035        CDS       T03699                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
sze  Siansivirga zeaxanthinifaciens
Pathway
sze03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sze00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    AW14_03035
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sze03400]
    AW14_03035
Enzymes [BR:sze01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AW14_03035
DNA repair and recombination proteins [BR:sze03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      AW14_03035
SSDB
Motif
Pfam: TRCF UvrB_inter DEAD Helicase_C CarD_TRCF_RID ResIII RecG_dom3_C SBP_bac_3
Other DBs
NCBI-ProteinID: AJR02770
UniProt: A0A0C5WJ88
Position
complement(646341..649688)
AA seq 1115 aa
MSKTSISQSYSQALQMQNLQTAISKNQSRVHLKGLVGSSLSFVVSNVFKDTELPFLLIFN
DKEEAAFYLNDLEQLVGDKDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKKPAI
IVTYPDALFEQVVTRKELERNTLKIAVNDKLSIDFVNEVLFEYQFKRVDFVTEPGEFSVR
GGIVDVFSFSNDEPYRIEFFGDEVDSIRTFDVETQLSIDQIKKISIIPNVANKLLQESRQ
SFLKYIAQKTVIGFKNADLFFSRIDDFYGKAVEAFKELSQDIKHAEPHELFASSRALKEQ
LLDFSILEFGTTAVFGSNSSNIIEFNTKPQPSFNKQFNLLIEDLNANYDKGFTNYIACVS
EQQAKRFHDIFDDSHLEVKPYSAIVLSLHQGFIDLENKIVCYTDHQLFERYHKFNVKNGY
AKKQAINLKELTNLDIGDYVTHIDHGIGRFGGLQKIDVEGKKQEAIKLVYGERDVLYLSI
HSLHKITKFNGKDGKPPKVYKLGSTAWKTLKEKTKARVKHVAFNLIKLYAKRKTEKGFQY
KPDSYMQHELEASFIYEDTPDQSTATADIKADMESERPMDRLVCGDVGFGKTEVAIRAAF
KAVDNGKQVAVLVPTTILAYQHSRSFKERLKDFPVTVDYINRFRTAKEKRETLEGLENGR
VDIIIGTHQLVNKTVKFKDLGLLIVDEEQKFGVAVKEKLKTIKENVDVLTLTATPIPRTL
QFSLMAARDLSVITTPPPNRYPIESHVIRFNEEVIRDAVSYEIERGGQIFFIHNRIENIK
EVAGLIQRLVPDAKIGIGHGQMDGKKLEALMLSFMDGAFDVLVSTTIIESGLDVPNANTI
FISNANNFGLSDLHQMRGRVGRSNKKAFCYFITPEYSAMTDDARKRITALEQFTELGSGF
NIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIEELKENEFKDLYDDNEDDKV
YVKDVTIDSDFELLFPDDYINNIAERLNLYTQLNGLKTEAELQKFEAELIDRFGELPTQV
EDLLNSVRIKWIATKVGFEKVIMKQGKFIGYFINDQQSNFYQSNNFTRVLQFVQKNPGAC
KMKEKQTRNGLRLLLTFEGVKSVNQVLKAIQPIVA
NT seq 3348 nt   +upstreamnt  +downstreamnt
gtgagtaaaacaagtatctcgcaatcgtattcacaggctttgcaaatgcaaaatctgcaa
acggctatttccaaaaatcaatctcgtgtacatttaaaaggcctagttgggtcgtcttta
tcgtttgttgtttcaaatgtttttaaggataccgaattgccttttttattaatttttaat
gataaagaagaagccgctttttatctcaacgatttagagcaattggttggtgataaagat
gttttgttttatcccggcagttaccgcaggccttaccaaatagaagaaaccgataacgct
aatgtgcttttacgtgccgaagtattaaatagaattaattcgcgcaaaaaaccggccatt
attgttacctatcccgatgccctgttcgaacaggttgttacccgaaaagaactcgagcga
aatacgttaaaaatagcagttaacgataaattgtctatagattttgtaaacgaagtcttg
tttgaataccagtttaaacgtgtcgattttgttaccgaacccggtgaattttcggttaga
ggtggtattgttgatgtgttttctttttctaacgacgaaccctatcgtatcgaatttttt
ggcgatgaggtagacagcataagaaccttcgatgtcgaaacccaattatcaatagatcag
ataaaaaaaataagcatcatcccaaatgttgccaataaattattgcaggaaagccgccaa
agttttctaaaatatattgctcaaaaaacggttattggttttaaaaacgccgatttattt
ttttctagaattgacgatttttacggaaaagcagtagaggcttttaaagaactttcacaa
gatattaaacatgccgaaccgcatgaattgtttgcttcttctagagctttaaaagagcaa
ctgttagatttttcaattttagaatttggaacgacagccgtttttggaagcaattctagt
aatattatcgagtttaataccaagcctcaaccatcgtttaacaagcaatttaatttatta
attgaagatttaaatgctaattacgataaaggatttaccaattacattgcttgtgtaagc
gaacaacaagccaagcgttttcacgatatttttgatgattcgcacctagaagttaaacct
tatagtgctatagttttgtctttgcatcaagggtttatagatcttgaaaataaaatagtt
tgttatacagaccatcagttatttgagcgttaccacaagtttaatgtaaaaaacggttat
gcgaaaaaacaagccatcaatttaaaagaactcaccaatttagatattggcgattatgtg
acccatatcgatcatggtattgggcgttttggcggtttacaaaaaattgatgtcgaaggt
aaaaagcaagaagctattaaattagtttatggcgagcgcgatgtgctgtatttaagtatt
cactccttacataaaatcaccaaatttaatggtaaagatggcaagccaccaaaggtttat
aaattaggtagtacggcctggaaaaccttaaaagaaaaaacaaaagcccgcgttaaacat
gtggcttttaacttaattaagctttacgccaaacgtaaaaccgaaaaaggctttcaatac
aagccagacagttacatgcagcacgaactggaagcgtcgtttatttacgaagacacgccc
gatcaaagcacagctaccgccgatattaaagccgatatggaaagcgaacgccccatggat
cgtttggtttgtggcgatgttggttttggtaaaactgaagttgccattcgagcagccttt
aaagcagtcgataacggcaaacaagtggctgttttagtgccaaccaccattttagcttac
caacattccaggtcttttaaagagcgtttaaaagattttcctgttacggtcgattatatt
aaccgttttagaacggcaaaagaaaaacgagaaactttagagggccttgaaaatggtcgc
gtcgatattattattggcacccatcaattggttaacaaaacggtgaaatttaaagattta
ggcttgttaattgtcgatgaagaacaaaagtttggtgtggcagtaaaagaaaaactcaag
accataaaagagaatgtcgatgttttaacgctaacagcaacgcccataccaagaacgctt
cagtttagtttaatggctgcaagagatttatctgtaataacaacgccaccaccaaaccgt
tatcctatcgagagtcatgttattcgttttaacgaagaagttattcgcgatgccgtgagt
tacgaaatagagcgtggcggacaaatctttttcattcataatcgtattgaaaatatcaaa
gaagtagccggcttaattcagcgtttagtgcccgatgctaaaattggtattggtcatggc
caaatggatggaaaaaaactagaagccctcatgctttcttttatggatggtgcctttgat
gttttggtaagtacaaccattattgaaagcggattggatgtgccaaatgcgaacaccatt
tttataagtaatgccaataattttggattgagcgatttgcaccaaatgcgcggtcgtgtt
gggcgaagcaataaaaaagccttttgttattttataacacccgaatattctgccatgacc
gacgatgctagaaaacgtattacggctctcgaacaatttacagaactgggaagcggcttt
aacattgccatgaaagatcttgaaattcgtggtgctggcgatttattaggtggtgaacaa
agcggatttataaacgaaattggcttcgatacgtatcaaaaaatattaaatgaagccatt
gaagaactcaaagaaaacgagtttaaagatttgtatgatgacaatgaagatgataaagtg
tacgtgaaagatgttaccatcgattccgattttgaattgttatttccagacgattatatt
aataatattgccgaaagattaaatctttatacccagttaaatggtttaaaaaccgaagcc
gagttacaaaaatttgaagccgaattaatagaccgttttggtgaattaccaacgcaggtt
gaagatttactaaacagtgtgcgcataaaatggatagccactaaagttggtttcgaaaaa
gttattatgaaacaaggcaagtttataggttattttataaacgaccaacaaagtaatttt
taccagagtaacaactttaccagagtgcttcagtttgttcaaaaaaatccgggagcttgt
aaaatgaaagagaagcaaacacgcaatggtttacgattattgcttacttttgaaggtgtt
aaatctgtaaatcaggtattaaaagcaattcagcctatcgtggcgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (52)   

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