KEGG   Thermoplasma acidophilum: Ta0929
Entry
Ta0929            CDS       T00037                                 
Name
(GenBank) conserved hypothetical protein
  KO
K07573  exosome complex component CSL4
Organism
tac  Thermoplasma acidophilum
Pathway
tac03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tac00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Ta0929
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tac03019]
    Ta0929
Messenger RNA biogenesis [BR:tac03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     Ta0929
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     Ta0929
SSDB
Motif
Pfam: ECR1_N Trm112p Auto_anti-p27 Rho_RNA_bind zinc-ribbons_6
Other DBs
NCBI-ProteinID: CAC12058
UniProt: Q9HJN8
Position
complement(998167..998781)
AA seq 204 aa
MEGDKKVAFPGDIIATTEEYLPGRNTEEKNGEIVATKFGNIVRDDINLMISVDTGKKEFF
LRKGDVVYGQVIKNDAHRYIVRVVGVFQRGTGLKEVDEEMQLSFGMSRRPQSDFVAVGDL
IRGYVVRTGDMPEISINGNHYGVISAVCSRCRQPLVKKNITLYCENCQRTEIRKIADDYG
SVDIFNYENRITHGSSHSEARRQN
NT seq 615 nt   +upstreamnt  +downstreamnt
atggaaggagataaaaaagttgcttttcccggagacataatcgccacaactgaggagtat
ctgccaggaaggaatacagaggagaagaatggggagatagtagcgacaaagttcggaaac
atagtgcgggatgatataaacttaatgatatctgtagatacgggaaagaaggagtttttc
ctcaggaagggcgatgttgtatacgggcaggttatcaagaacgacgctcacaggtacatc
gtaagggttgtaggggtatttcagaggggaactggcctgaaagaagtagatgaggagatg
cagctttcctttggcatgtctaggaggccacagtcagatttcgttgcagtaggtgatctg
ataaggggatatgtggtacgaactggtgatatgcctgaaatatccataaatggcaaccac
tacggtgttataagcgctgtgtgctccagatgcaggcaaccgcttgtgaaaaagaacata
acattatactgtgaaaactgccagcgcactgaaatacggaaaattgcagacgactatggc
agcgtagatatattcaattatgaaaacaggataacccatggaagtagccatagcgaggcc
cgtaggcagaattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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