KEGG T01377: TERMP

Thermococcus barophilus: TERMP_01956

Entry

TERMP_01956 CDS T01377

Definition

ATP-dependent DNA ligase

Orthology

K10747

DNA ligase 1 [EC:6.5.1.1]

Organism

tba Thermococcus barophilus

Pathway

tba03030	DNA replication
tba03410	Base excision repair
tba03420	Nucleotide excision repair
tba03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:tba03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:tba03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:tba03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:tba03430]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C Peptidase_S7 DNA_ligase_OB_2 UCR_UQCRX_QCR9

Other DBs

NCBI-GI:

315231717

NCBI-GeneID:

10042271

UniProt:

F0LL23

Position

complement(1749695..1751380)

AA seq 561 aa
MLYKELAELYRRLEKTTLKTLKTRFVADFLKKVEDEELLEIVPYLILGKVFPDWDERELG
VGEKLLIKAVAMATGINAEWIENSVKDTGDLGESVALALQKRKQRSFFGQPLTIKRVYKT
LVKVAETTGEGSQDRKLKYLANLFMDAEPIEGKYLARTILGTMRTGVAEGLLRDAIAEAF
RVKPELVERAYMLTSDFGFVTKIAKLEGNEGLSKVTIQIGKPIKPMLAQMAANVREALVE
MGGEAEFEIKYDGARVQVHKDGDKVIIYSRRLENVTKSIPEVVERIKKSIKPEKAIVEGE
LVAVGEGGRPRPFQYVLRRFRRKYNIQEMIEKIPLELNLFDVLYVDGENLIDTPFIERRK
KLESIVEVNQWIKVAENLITKSPEEAEEFYHKALDMGHEGLMAKRLDSVYEPGNRGKKWL
KIKPTMENLDLVIIGAEWGEGRRAHVLSSFLLGAYDPGTGTFVPVGKVGSGFTDEDLVEF
TKMLKPLIKKEKGKFVEIEPKVVIEVTYQEIQKSPKYESGFALRFPRYVALREDKSPEDA
DTLERIAQLYELQERMKAGKR

NT seq 1686 nt +upstreamnt +downstreamnt
atgctgtacaaagagttggccgagctatataggagactggaaaaaacaacactcaagaca
ttaaaaacaaggtttgtcgctgattttctcaagaaggttgaagatgaggagcttttggaa
attgtgccctacctcattctgggaaaggtcttcccagattgggatgaaagggaattggga
gtcggtgaaaaattgcttatcaaagcggttgcaatggcaacgggtattaatgcggagtgg
atagagaactcggtgaaagacactggtgatctgggagagagtgtcgcattagcccttcaa
aaaagaaaacaaaggagcttttttggacagcctttgacaataaaaagggtttacaaaact
ctcgtgaaagttgcagaaaccactggagaagggagtcaagacaggaagcttaaatatctt
gcaaaccttttcatggatgccgaaccaattgaagggaaatatctggcaagaacaattctc
ggaacaatgagaacaggagttgctgagggacttttgagagatgcaatagctgaggcattc
agagtaaaaccggagcttgttgagagggcttacatgctaacaagtgattttggtttcgtt
acaaaaatagccaagcttgagggaaacgaaggactgtcaaaggtcacaatccagatcgga
aagcctataaaaccaatgcttgcccaaatggccgctaatgtcagagaagctttagtcgaa
atggggggcgaagcagagttcgaaattaaatacgacggtgcaagagttcaagtccataaa
gatggagataaagtgataatctattccagaagactggagaacgttacgaagtccattcca
gaggttgttgagaggataaagaagagcataaagccagaaaaagccatagttgaaggagaa
cttgtagcagttggagaaggggggaggccaagaccgttccaatatgttttgaggaggttt
aggagaaagtacaatatccaagagatgattgagaaaatacctttggagcttaatttattc
gatgttctttacgttgatggagagaacttaattgatactccttttatagagcgccgcaag
aaattggagagcatagttgaagtcaatcagtggattaaagttgcagagaacttgataaca
aaaagtccggaagaagctgaggaattttaccacaaagccctcgacatggggcatgaaggg
ctgatggctaaaaggctcgattcggtttacgagccaggtaacaggggtaaaaagtggctc
aagatcaagcccacaatggagaacctcgatttggtaatcattggagcagaatggggagaa
gggaggagggcgcatgttctaagctctttcctgcttggtgcttatgaccctggaactgga
acttttgtcccagttggaaaagttgggagcggatttacagatgaagacttagttgagttt
acaaagatgcttaagcctctcataaagaaagagaaagggaaatttgtagagatagaacca
aaagtagtaattgaagttacataccaagagatccagaagagtccaaaatacgagagcggc
tttgcattaagattcccaagatacgtggcattaagggaagacaaaagcccagaagatgct
gataccttagaaagaattgcacagctgtatgagttacaggagaggatgaaagcgggaaag
cgctaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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