KEGG   Treponema brennaborense: Trebr_1211
Entry
Trebr_1211        CDS       T01489                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
tbe  Treponema brennaborense
Pathway
tbe03030  DNA replication
tbe03410  Base excision repair
tbe03420  Nucleotide excision repair
tbe03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tbe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Trebr_1211
   03410 Base excision repair
    Trebr_1211
   03420 Nucleotide excision repair
    Trebr_1211
   03430 Mismatch repair
    Trebr_1211
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tbe03032]
    Trebr_1211
   03400 DNA repair and recombination proteins [BR:tbe03400]
    Trebr_1211
Enzymes [BR:tbe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Trebr_1211
DNA replication proteins [BR:tbe03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Trebr_1211
DNA repair and recombination proteins [BR:tbe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Trebr_1211
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Trebr_1211
   MMR (mismatch excision repair)
    DNA ligase
     Trebr_1211
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Trebr_1211
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_5 HHH_2 PTCB-BRCT RNA_ligase Biopterin_H
Other DBs
NCBI-ProteinID: AEE16639
UniProt: F4LLH5
Position
1440379..1442319
AA seq 646 aa
MDLFEASRVQELAALIEKYQDSYYNGEAEISDAEFDALWDELKQLDPAHPVLHRIGSDSG
NFLKASHRMPMGSQEKAADPEEFLAWAEKHPYDEYLVEYKLDGASLELQYDNGVFAKAVT
RGNGAVGDDITVNARKMGGVKLRLTRDSSPCPYTGSIRGEVVMDHDVHRTHFPDKANCRN
AANGLMRRKDGEGCEYLHVVCYDALFSDHQFADEQDKIAWLSACGFQTVPLEICKTAQEV
IDYRAKVMESRAELPYDIDGLVVKERRIDPEDAARARPDRQIAFKFSLEEAVSVVREIEW
SESGATYTPIAVFDPVELAGTTVKRASLVNPNTMRALGVRLGSHIVVTKRGEIIPKIESV
VPQSDSAEDSPDESATCAVPSECGTCRTALVDEGTRLYCPNKACPKRILHRLEKWITVLD
IRDLGTTLIRALFDSGRVRSVSDLYTLTVQELTPYFLAEESLAKEKKSLGAEKVYKSLQS
RRKISLAAFVAGFDIEGIGETLVEKLVASHPDMDTLEKLLGAAEAEIALVNGFGDITAQA
LVQGLAENAAEMRSLVDSGTIELEAVVSSGKLSGRSFCFTGELSVKRSEAEQAVKALGGT
TKSSVVKGLSYLVTNDTESGSSKNKKAAGLGIPVIDEAAFWELVHG
NT seq 1941 nt   +upstreamnt  +downstreamnt
atggatttgtttgaagcgtcgcgcgtgcaggaacttgccgcgcttatagaaaaatatcag
gattcgtattacaacggcgaagcggaaatctccgacgcggaattcgacgcgctctgggat
gaattgaagcagctcgatccggctcatccggtgctgcaccgcatcggctccgattcggga
aattttctgaaagcctcgcaccgtatgccgatgggcagtcaggaaaaagcggctgatccc
gaagaatttcttgcctgggcggaaaaacatccgtacgacgaatatctggtggaatataaa
ctcgacggtgcgagtctcgaactgcaatacgataacggcgttttcgcaaaagcggtaacg
cgcggcaacggcgccgtcggcgacgatatcacggtaaacgcgcgcaaaatgggcggcgta
aaactgcgtctcacgcgggactcctcgccgtgtccgtataccggcagtatccgcggtgaa
gtggtcatggatcacgacgtacatcgcactcattttccggacaaggcgaactgccggaac
gcggcgaacgggctgatgcggcgtaaagacggcgagggctgcgaatatctgcacgtcgtc
tgctacgacgcgctgttctccgatcatcagtttgcggacgagcaggataaaatagcgtgg
ctttcggcgtgcggttttcaaacggtaccgcttgaaatctgtaaaacggcgcaggaagta
atcgattaccgcgccaaagtgatggaatcgcgcgcggaacttccgtacgatatagacggc
ctggtcgtaaaagagcgccgcatcgatccggaagacgccgcaagggcgcgtcccgaccgg
cagattgcgtttaagttcagtctggaagaagccgtttcggtcgtccgggagatcgaatgg
agcgaatccggagcgacgtacacgccgatcgccgtttttgatccggtggaactcgccgga
accacggtaaaacgggcgagtctggtaaatccgaatacgatgcgcgcgctcggcgtgcgg
ttgggcagccatatcgtcgtgaccaagcgcggagaaatcattcccaaaatcgaatcggta
gtaccgcaaagcgactctgcggaagattcgccggacgaatcggcaacgtgcgccgtgccg
tccgaatgcggtacgtgccgtacggcgctggtcgacgaaggtacgcggctgtattgcccg
aacaaagcctgtccgaagcgcattctgcatcggcttgaaaaatggataaccgtgctcgat
atccgcgacttgggcacgacgctcatccgcgcgctgttcgattcggggcgcgtccgctcc
gtttccgatttgtatacgcttacggttcaggaactgacgccgtattttctggcggaagaa
agtcttgccaaagagaaaaaatcgctcggtgcggaaaaagtgtacaagtcgctgcagtcg
cgcagaaagatttcactcgccgcttttgtcgcgggattcgacatagaaggaatcggcgaa
acgctcgttgaaaaactcgtcgcctcgcatcccgatatggatacgctcgaaaagctgctc
ggcgcggcggaagccgaaatcgcgctcgtaaacggattcggcgatattaccgcgcaggcg
ctggtgcaggggctcgccgaaaacgctgcggagatgcgctctttagtcgattccggaacg
attgaacttgaagcggtcgtttcgtcgggaaaactttcgggccggtcgttctgctttacc
ggagagctgtccgttaaacgctcggaagccgaacaggccgtcaaagcactcggcggtacg
acgaaatcgtcggtggtaaaaggactttcgtatctggtaacgaacgacacggagtccggt
tcgtccaaaaataaaaaagctgctggccttggaattccggtcatcgacgaagccgctttt
tgggaattggtgcacggctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (28)   

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