KEGG T01236: Tbis

Thermobispora bispora: Tbis_2256

Entry

Tbis_2256 CDS T01236

Definition

ATP dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

tbi Thermobispora bispora

Pathway

tbi03410	Base excision repair
tbi03420	Nucleotide excision repair
tbi03430	Mismatch repair
tbi03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:tbi03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:tbi03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:tbi03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:tbi03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(2620873..2621931)

AA seq 352 aa
MRLPVQPPIAPMLAKAVARPPAQDGTLYYEPKWDGFRCIVFRDGDEVHLGSRNERPFTRY
FPEVVAAVRAELPPRCVVDGEIVVRSGPVLDFDALQQRIHPAASRVALLAERTPASFIAF
DLLAIGDENLMGAPFSARRARLEQAAARAGASVLLTPVTRDERVAAEWFDLFEGAGLDGL
VVKPGGLPYLPGKRVMLKVKHERTADCVVAGYREHASGPVVGSLLLGLYGGDGRLHHVGV
ASAFPMRQREELVARLAPYRTELSGHPWAGEAGATGQRVPGGVSRWTGKKDMSFIPLRPE
LVAEVAYDHMEGDRFRHTARFRRWRPDRDPASCTYAQLERPVAYDLDDILAR

NT seq 1059 nt +upstreamnt +downstreamnt
atgaggcttccggtccagccgccgatcgcgcccatgctcgccaaggcggtcgcccggccg
cccgcccaggacggcacgctctactacgagccgaagtgggacgggttccggtgcatcgtg
ttccgggacggcgacgaggtccacctgggcagccggaacgagcggccgttcacccgctac
ttcccggaggtggtggccgcggtccgggccgagctgcccccgcgctgcgtcgtggacggg
gagatcgtggtgcgttccggtccggtgctcgacttcgacgcgctccagcagcgcatccac
cccgccgcctcccgggtggcgctcctcgccgagcgcacgcccgcctcgttcatcgccttc
gacctgctcgcgatcggcgacgagaacctgatgggcgcgccgttctcggcccggcgcgcc
cgcctggagcaggccgccgcccgggccggcgcctcggtgctgctcaccccggtgacccgg
gacgagcgggtcgccgccgagtggttcgacctgttcgagggcgccgggctcgacggcctc
gtggtcaagcccgggggcctgccgtacctgccgggcaagcgggtgatgctcaaggtgaag
cacgagcggacggccgactgcgtggtcgccggctaccgggagcacgcctcgggcccggtc
gtcggctccctcctgctcggcctgtacggcggcgacggccgcctccaccacgtcggggtg
gcctccgccttcccgatgcggcagcgggaggagctcgtggcccggctcgcgccgtaccgg
acggagctgagcggccacccgtgggcgggggaggcgggggcgaccgggcagcgcgtcccg
ggcggcgtctcccggtggacggggaagaaggacatgtcgttcatcccgctccggcccgag
ctggtggccgaggtcgcctacgaccacatggagggcgaccggttccggcacaccgcccgg
ttccgccgctggcggcccgaccgcgaccccgcctcctgcacgtacgcccagctcgagcgg
ccggtcgcctacgacctcgacgacatcctcgcccggtag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-TBI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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