KEGG   Trypanosoma brucei brucei: Tb09.160.5160
Entry
Tb09.160.5160     CDS       T01013                                 
Name
(RefSeq) exosome complex exonuclease RRP40
  KO
K03681  exosome complex component RRP40
Organism
tbr  Trypanosoma brucei brucei
Pathway
tbr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tbr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Tb09.160.5160
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tbr03019]
    Tb09.160.5160
Messenger RNA biogenesis [BR:tbr03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     Tb09.160.5160
SSDB
Motif
Pfam: RRP40_S1 KH_6
Other DBs
NCBI-GeneID: 3660478
NCBI-ProteinID: XP_827065
UniProt: Q38EN5
Position
9:1096920..1097834
AA seq 304 aa
MSETNPVVRGAVGVHELAPLCSHVCLPGESVLLLEPTAVVTLGSGLHPLQQDGSDDRKES
FEASGEEGSTVVVSEFCGPVLRTAGPNHTQLYKLNGPAARRYMYAARDPVVAIVMKKNAS
YYSCYTGAASLAVLDALGFDGATKTNKPRLQEGDVVYAFVKGNADASSLDTKFDDGRVVV
SSSDEVELSCMAAEVGLVARDWTSAEAVFGPLVGGTVVRVALPYARSLIDGPASRLLALL
GDRVPYDVCVGVNGLVWVRGHPSAADPTAAARRTVAVAACVVEAQDAATLEEMEAHVRGY
FPKE
NT seq 915 nt   +upstreamnt  +downstreamnt
atgagtgaaacaaacccagtagtgagaggtgccgttggtgtacatgaacttgcaccactc
tgttctcacgtttgtttgccaggggaatcggtgctactgctggaacccacggctgtcgtg
acccttggtagtggtcttcatccactccaacaagatggcagtgatgaccgtaaggagagt
tttgaagcctcaggtgaagaaggaagcactgttgtggtttccgagttttgtggacctgtg
ttgcgcaccgcggggccaaatcacacacagctatacaaactcaatggaccggcggcacgt
cgctacatgtacgcagccagggaccccgtagtggcaattgtaatgaagaagaacgcgagt
tattactcgtgctatactggtgctgcatcgttggctgtgcttgacgctcttggctttgat
ggtgccacgaaaacaaacaaacctcgattacaagagggtgacgttgtttatgcctttgtg
aaagggaacgctgatgcctcatcccttgatacaaagtttgatgatggtcgtgtggtggtt
tcctccagtgacgaggtggaactaagttgcatggctgctgaggtcggtttagtggcgcgg
gactggacctcagcagaggcagtctttggcccgcttgtgggtggcacagttgttcgtgtc
gcgttaccttatgcgcgcagtcttatcgacggccctgcttcgcggttgcttgcactgttg
ggagatcgcgtgccgtacgatgtgtgtgttggagtcaacggtctcgtctgggtgcgagga
catcccagtgctgctgaccccacggcagccgcccgccgtactgttgctgtggcggcgtgt
gtagttgaggcgcaggatgccgcgacactggaggagatggaagcccacgtacgcggttat
tttcccaaggagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (17)   

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