KEGG   Trypanosoma brucei brucei: Tb09.211.3310
Entry
Tb09.211.3310     CDS       T01013                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
tbr  Trypanosoma brucei brucei
Pathway
tbr03030  DNA replication
tbr03410  Base excision repair
tbr03420  Nucleotide excision repair
tbr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tbr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Tb09.211.3310
   03410 Base excision repair
    Tb09.211.3310
   03420 Nucleotide excision repair
    Tb09.211.3310
   03430 Mismatch repair
    Tb09.211.3310
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tbr03032]
    Tb09.211.3310
   03036 Chromosome and associated proteins [BR:tbr03036]
    Tb09.211.3310
   03400 DNA repair and recombination proteins [BR:tbr03400]
    Tb09.211.3310
DNA replication proteins [BR:tbr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    Tb09.211.3310
  DNA Replication Termination Factors
   ELG1-RFC complex
    Tb09.211.3310
Chromosome and associated proteins [BR:tbr03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    Tb09.211.3310
DNA repair and recombination proteins [BR:tbr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     Tb09.211.3310
  Check point factors
   HRAD17(Rad24)-RFC complex
    Tb09.211.3310
SSDB
Motif
Pfam: AAA Rep_fac_C DNA_pol3_delta2 Rad17 AAA_30 AAA_5 AAA_22 AAA_19 AAA_14 AAA_24 DEAD AAA_16 DUF815 AAA_11 RuvB_N Mg_chelatase AAA_7 ATPase_2 AAA_2 TniB SLFN-g3_helicase AAA_3 AAA_assoc_2 nSTAND3 AAA_28 NB-ARC AAA_23 bpMoxR AAA_18 RNA_helicase AAA_29 ABC_tran AAA_33 T2SSE Sigma54_activat AAA_25
Other DBs
NCBI-GeneID: 3660934
NCBI-ProteinID: XP_827475
UniProt: Q38DH5
Position
9:1861209..1862282
AA seq 357 aa
MTGEGTLSNGQPAKNSTLPWVEKYRPTTLDDVVAHEEILDTTRRLMNSGSMPHLLFYGPP
GTGKTTTIKACAHHLFGKERLRANVLEMNASDDRGIDVVRQQVREFASTSSIFFQNNPGN
QTVTNFKLVILDEADQMSSDAQAALRRIIEKFTKNVRFCILCNHINKIIPALQSRCTRFR
FSPVKKSAMLPRLKLIAREEGVPFTDEGLISAFRLSDGDMRRCLNTMQASSMSAGEITEE
SVYRTTGNPTPTDVRVMVGDMLSHNYATSWEKVQQLVVDKGVSTADLVREVHLIVMAMDL
PQDCKCFLLIKLADVEYYAAGGTREMINIGGVLGAFQLVKEALTQNKPIFELAGGLC
NT seq 1074 nt   +upstreamnt  +downstreamnt
atgacgggagaaggcacactgtcgaatgggcaacctgcgaagaatagtacacttccatgg
gtggagaagtaccgccccactacacttgatgatgtggtggcacatgaagaaatccttgac
accacgcgtcgcttgatgaacagtggtagcatgccacatcttcttttctatggcccacca
ggaaccggcaaaacaacaaccattaaagcgtgcgctcatcacctatttggaaaagagcgt
ctgcgggccaacgtactcgagatgaacgcgtcagatgatcgcggtattgatgttgtgcgt
cagcaggttagggagtttgcgagcacaagctctatattttttcaaaacaaccccggaaac
caaacggtaacgaatttcaaactcgttattcttgatgaggctgaccagatgtccagtgat
gcgcaggccgccttacgccgcatcattgaaaaatttacgaaaaacgtacgattctgcata
ttgtgcaatcacatcaacaaaatcataccagccctacagtcgcggtgcacgcggtttcgc
ttctctcctgtgaaaaaatcagcgatgcttccccgcctgaagttaattgccagggaagaa
ggtgttcccttcactgacgagggtttgatatctgcatttcgacttagtgatggcgatatg
cggcgttgtttgaatactatgcaggcctcctctatgtcagcaggggaaattacagaagag
tctgtgtatcgcacaactggcaacccaacacctacggatgtgcgagtaatggtgggagac
atgctgtcgcataattacgccacatcatgggagaaggtgcagcagctggtagtggacaag
ggcgtgtcaacggcagatctggtgagggaagtgcaccttatcgtgatggcgatggatctc
ccacaagactgtaaatgttttcttttgataaaactggcggatgtggaatactacgcagca
ggtggtacccgggagatgatcaacattggtggggtgcttggtgcatttcaattggtgaag
gaagcacttacccaaaataaacctatctttgagctcgcaggtggcctgtgctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (36)   
   Pfam (36)   
All databases (64)   

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