KEGG   Theobroma cacao (cacao): 18588335
Entry
18588335          CDS       T02994                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    18588335
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tcc03019]
    18588335
Messenger RNA biogenesis [BR:tcc03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     18588335
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 NBCH_WD40 Cytochrom_D1 eIF2A Ge1_WD40 PROPPIN WD40_like RMC1_N PD40 DUF5711
Other DBs
NCBI-GeneID: 18588335
NCBI-ProteinID: XP_007012729
UniProt: A0A061GLR7
Position
9:complement(4291673..4293673)
AA seq 321 aa
MAKSMKLAGLKSVDNAHDESVWAATWVPATDTRPALLLTGSLDETVKLWRPDELELVRTN
TGHCLGVVSVAAHPSGVIAASASLDSLVRVFDVDTNATIATLEAPPSEVWQMQFDPKGTT
LAVAGGGSASIKLWDTATWRLISTLSIPRPEGPKPSDKSSSKKFVLSVAWSPDGRRLACG
SMDGTISVFDVARAKFLHHLEGHYMPVRSLVFSPEPDSRKLYSASDDGHVHIYDAEGKAL
IGAMSGHTSWVLSVDVSPDGEAIATGSSDKTVRLWDFKMRAAIQTMSNHTDQVWAVAFRP
GGGGRLASVSDDKSISLYHCS
NT seq 966 nt   +upstreamnt  +downstreamnt
atggcaaaatcaatgaaactggcgggcctaaaatccgtcgataatgcccacgacgagtcc
gtttgggctgccacgtgggttcccgccaccgacacccgcccggcccttctgttaactggg
tccctcgacgaaaccgtcaagctgtggaggcccgacgagctcgagctcgtccgcaccaac
accggccactgtctcggcgtcgtttcggtggccgcccatccttctggcgtgatcgccgcc
tccgcctccctcgacagcttggttcgggtgtttgacgtcgacaccaacgccaccatcgcc
actctcgaagctcctccctctgaggtctggcaaatgcaattcgatcccaagggtacaaca
cttgcagttgctggtgggggtagtgcgtcaatcaagctgtgggacactgcaacgtggagg
ttgatttcaactttatcaattcctcgtcctgaaggaccgaagccctctgataaaagcagc
agcaagaagtttgtcctatctgttgcatggagtcctgatggaagacgtcttgcttgtggc
tcaatggatggcacaatttctgtttttgatgtagctcgtgccaaatttctacatcacctt
gaaggccattacatgcccgttaggtctcttgtgttttctcctgaacctgattcacggaag
ctatactcggcatctgatgatggtcatgtacatatctatgatgctgaggggaaagctcta
atcggggccatgtcaggtcatactagctgggtgttgagtgtggatgtaagccctgatgga
gaggctattgcaacaggctcaagtgacaaaactgtaagactatgggattttaagatgaga
gcagctatacagacaatgagcaatcacacagaccaggtttgggcagtggcatttcgacct
ggtggaggaggtcgccttgctagtgtgtcagatgacaagagtatatcattatatcattgt
tcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (11)   
   Pfam (11)   
All databases (27)   

Download RDF
DBGET integrated database retrieval system