KEGG   Theobroma cacao (cacao): 9978094
Entry
9978094           CDS       T02994                                 
Symbol
rpoC1, ThcaC_p012
Name
(RefSeq) RNA polymerase beta
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    9978094 (rpoC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tcc03021]
    9978094 (rpoC1)
   03400 DNA repair and recombination proteins [BR:tcc03400]
    9978094 (rpoC1)
Enzymes [BR:tcc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     9978094 (rpoC1)
Transcription machinery [BR:tcc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     9978094 (rpoC1)
DNA repair and recombination proteins [BR:tcc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      9978094 (rpoC1)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3
Other DBs
NCBI-GeneID: 9978094
NCBI-ProteinID: YP_004021308
UniProt: E3VTX9
Position
Pltd:complement(21580..24426)
AA seq 682 aa
MIDRYKHQQLRIGSVSPQQISAWANKILPNGETVGEVTKPYTFHYKTNKPEKDGLFCERI
FGPIKSGICACGNYRVIGNEKEGPQFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
RLPSYIANLLDKPLKELEGLVYCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT
TQGFDTFRNREISTGAGAIREQLADLDLRILIDYSLVEWKELGEESLTGNEWEDRKIGRR
KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI
YRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI
EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLA
PNIGVAKSQIREKGPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP
LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLY
VLTSGNRRGICANRYNPWNRKNYQNERIADKYTKEPFFCNSYDAIGAYRQKRINLDSPLW
LRWQLDQCVIASREAPIEVHYESLGTYHEIYGHYLIVRSVKKEILCIYIRTTVGHISLYR
EIEEAIQGFFRACSYDTQLYGI
NT seq 2049 nt   +upstreamnt  +downstreamnt
atgatcgaccggtataaacatcaacaactccgaattggatcagtttctccccaacaaata
agtgcttgggccaataaaatcctacctaatggagaaaccgttggagaggtgacaaaaccc
tatacttttcattacaaaaccaataaaccggaaaaggatggattattttgtgaaagaatt
tttggacctataaaaagtggaatttgcgcttgtggaaattatcgagtaattggaaatgaa
aaggagggccctcaattttgtgaacaatgcggagttgaatttgttgattctcggatacga
agatatcaaatgggatacataaaactggcatgtccagtaactcatgtatggtatttgaaa
cgtcttcctagttatatcgcgaatcttttagataaacctcttaaagaattagagggtcta
gtatactgcgatttttcttttgctaggcccatcgctaaaaaacctactttcttacgatta
cgaggttcattcgaatatgaaattcaatcctggaaatacagtatcccacttttttttact
acccaaggtttcgatacatttcgaaatcgagaaatttcgactggagcaggtgctattcga
gaacaattagccgatctagatttgcgaattcttatcgattattcgttggtagaatggaaa
gaattaggggaagaaagcctcacgggtaatgaatgggaagatcgaaaaattggaagaaga
aaggattttttggttagacgcatggaattggctaagcattttattcgaacaaatatagaa
ccagaatggatggttttatgtctattaccggttcttcctcccgagttgagaccgatcatt
cagatagatgggggtaaactaatgagttcagatattaatgaactctatagaagagttatc
tatcgaaataatactcttaccgatctattaacaacaagtagatctacgccaggggaatta
gtaatgtgtcaggaaaaattggtacaagaagccgtggatacacttcttgataatggaatc
cgcggacaaccaatgagggacggtcataataaggtttacaagtcgttttcagatgtaatt
gaaggcaaagagggaagatttcgtgagactttgcttggcaaacgagtcgattattcggga
cgttctgtcattgttgtcggcccctcgctttcattacatcgctgtggattgcctcgcgaa
atagcaatagagcttttccagacatttgtaattcgcggtctaattagacaacatcttgcc
ccgaacataggagttgctaagagtcaaattcgggaaaaagggccgattgtatgggaaata
ctgcaagaagttatgcaggggcatcctgtattgctgaatagagcgcctactctgcataga
ttaggtatacaggcattccaacctattttagtggaaggacgcgctatttgtttacatcca
ttagtttgtaagggattcaatgcagactttgatggggatcaaatggctgttcatgtacct
ttatctttagaggcgcaagcagaggctcgtttacttatgttttctcatatgaatctcttg
tctccagctattggggatcccatttccgtaccgactcaagatatgcttattgggctctat
gtattaacgagcgggaatcgtcgaggtatttgtgcgaataggtataatccatggaatcga
aaaaactatcaaaatgaaagaattgccgataagtatacaaaggagccttttttttgtaat
tcctatgatgcaattggagcttatcggcaaaaaagaatcaatttagatagtcctttgtgg
ctccggtggcaactagatcaatgcgttattgcttcaagagaagctcccatcgaagttcac
tatgaatctttgggtacctatcatgagatttatggacattatctaatagtaagaagtgta
aaaaaagaaattctttgtatatacattcgaaccactgttggtcatatttctctttatcga
gaaatcgaagaagctatacaaggtttttttcgggcctgctcgtatgatacccaattatat
ggtatctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (21)   

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