KEGG   Hydrogenovibrio crunogenus: Tcr_2143
Entry
Tcr_2143          CDS       T00296                                 
Name
(GenBank) DNA-directed RNA polymerase, omega subunit
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
tcx  Hydrogenovibrio crunogenus
Pathway
tcx03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tcx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Tcr_2143
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tcx03021]
    Tcr_2143
   03400 DNA repair and recombination proteins [BR:tcx03400]
    Tcr_2143
Enzymes [BR:tcx01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Tcr_2143
Transcription machinery [BR:tcx03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Tcr_2143
DNA repair and recombination proteins [BR:tcx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Tcr_2143
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-ProteinID: ABB42731
UniProt: Q31DP2
Position
2364398..2364622
AA seq 74 aa
MARVTVEDCLDQVENRFELVILSSKRARQLSNGAEPTLDWDKDKPTVMALRELAENTINK
EVVMSDPDTPPFFG
NT seq 225 nt   +upstreamnt  +downstreamnt
atggcacgcgtaactgtagaagattgtttagatcaagttgaaaatcgttttgaactggtt
attttaagctctaagcgagctcgtcaattatcaaatggcgcagaaccaacactagactgg
gataaagacaagccgactgttatggcattacgtgaattagcggaaaacacgattaacaaa
gaagtcgtcatgtctgatcctgacacccctccttttttcggataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (1)   
   Pfam (1)   
All databases (18)   

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