KEGG T01517: Thicy

Thioalkalimicrobium cyclicum: Thicy_0525

Entry

Thicy_0525 CDS T01517

Definition

exodeoxyribonuclease V subunit alpha (EC:3.1.11.5)

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

tcy Thioalkalimicrobium cyclicum

Pathway

tcy03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:tcy03440]

SSDB

Motif

Pfam:

AAA_30 UvrD_C_2 AAA_19 Viral_helicase1 DUF2075 Helicase_RecD AAA_11 UvrD-helicase AAA_22 PhoH UvrD_C AAA_12 AAA_5 AAA_25 AAA_10 AAA_29 AAA_16 NTPase_1 T2SE AAA_28 PIF1 AAA_14 SRP54 AAA DUF4037 Herpes_Helicase KaiC

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(657461..659101)

AA seq 546 aa
MTIQTQNATDSATLSAESDVTNSFLDHRLAAFFAPDNPALAKIIKTLSRAQSEGHSCIQL
NSEQQAIIKNNPNDAWVLDGDLLYFARYHQYETELAQALKQRANIDVPLANAPELSRYFD
DPHQQQAAELALTKQLALITGGPGTGKTTTVVKILALLIQQNPYATFALAAPTGKAAMRL
QESITNSKAGLVNLFDADLLNHVPQEVTTLHRLLGARPLTPVFKHHADNPLSHDVIVVDE
ASMIDLALMSKLVKALKPDAKLILLGDKDQLASVESGSVLADCYRALQNNRVELQTTYRF
NEQIKQLAQAVNQQQVEQVLALCQDANKTDDTTAINFKSVKHARDLKGFIQHHYRAYFEQ
AAKVDSEDAIRALFETFNQFKILTATREGDFGLHTFNQLSQPDTILPHWYTGRAIMIEKN
DPATGLYNGDIGLCLPDIENPNSGQLKVYFILGESLRAFVPSRLPSHQTAFAMTIHKSQG
SEFAHVMIVLGNELNSKTESLITKELLYTAITRAKTQVTVVANQELLAQCVSNPIQRHSG
LADCLS

NT seq 1641 nt +upstreamnt +downstreamnt
atgactatccaaacccaaaacgcaactgattctgcgaccttgtcagctgaaagcgatgtg
actaactcctttttagaccaccgcttagcggcgttttttgccccggataatccggcgttg
gcgaagatcattaaaacgttgtcacgcgctcagagtgaaggccatagttgcatccagctt
aatagtgaacagcaagcgattatcaaaaataatccgaatgacgcttgggtattagatggc
gatttactgtattttgctcgttaccatcaatacgaaaccgaattggcgcaagccctgaaa
cagcgtgccaatatagatgtcccgcttgcgaatgcgcctgaactgtcgcgctattttgac
gacccgcatcaacaacaggccgccgaattggccctgaccaaacaactggcgttgattacc
ggcggtccggggactggcaaaaccactaccgtggttaaaatcttagcgctgctgattcaa
caaaacccctacgccacctttgccctcgccgccccaaccggcaaagccgcaatgcgtttg
caagaatcgattactaacagcaaagcaggcctggtgaatctgtttgacgcggatttgctc
aatcacgtgccacaagaggttaccaccttacatcgattgctcggcgcccgaccgctaacc
cctgtatttaaacaccatgccgacaacccgctcagtcacgatgtgattgtggtcgacgaa
gcttcgatgattgatttggcgctgatgagcaaactagtgaaggcgttaaaacccgatgcg
aaactgattttgcttggagacaaagaccaactcgcctcagtggaatcgggctcggtattg
gccgattgttatcgtgcgttacaaaataatcgcgtcgaactgcaaaccacttatcggttt
aatgaacaaattaaacagctggcgcaagctgtgaatcaacaacaggttgagcaggtattg
gcgttatgccaagacgcaaacaaaaccgatgatacgaccgcgataaattttaaatcggtt
aagcacgcccgcgacttaaaaggttttattcaacaccactatcgagcgtactttgaacag
gcggcgaaagttgacagtgaagatgctattcgtgcgctgtttgagacctttaaccaattt
aaaatccttactgccacgcgagaaggtgattttgggttacatacgtttaaccagctcagt
caaccggatacgattttgccgcattggtatactggacgagccatcatgattgagaaaaac
gaccccgccaccggcttatataatggtgacatcggtctgtgtttgccggatattgagaat
cccaacagcggtcaactcaaagtatattttatactcggtgaaagcttgcgagcgtttgtg
ccgagtcggttaccaagccatcaaaccgcgtttgcaatgaccattcacaaaagccaaggc
tctgaattcgcacacgtgatgatcgtattgggcaatgaattaaacagcaaaaccgaatcg
ctgatcaccaaagaattgctatacaccgcgattacccgtgccaaaacgcaggttacagtc
gttgccaatcaagagctgttagcacaatgtgttagcaacccaattcaacgccacagcggg
ttagcggattgtttgagctga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (27)   
   Pfam (27)   
All databases (37)   

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