KEGG   Tenacibaculum todarodis: LPB136_09700
Entry
LPB136_09700      CDS       T04588                                 
Name
(GenBank) RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
ten  Tenacibaculum todarodis
Pathway
ten03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ten00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LPB136_09700
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ten03019]
    LPB136_09700
Messenger RNA biogenesis [BR:ten03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     LPB136_09700
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 LED_rpt AAA_22 Flavi_DEAD AAA_30 UvrD-helicase
Other DBs
NCBI-ProteinID: APG65621
UniProt: A0A1L3JKH5
Position
2137638..2138870
AA seq 410 aa
MQFSDLPLHETILRAIAQENYRTATPVQEKAIPLVLAKKDVIVSAQTGSGKTAAFALPII
QMLLDGQNSEKKKKRIKALVVSPTRELALQIEENFKNYSKFTDLKTTTVYGGVSLNPQKE
ALKEGVDILIATPGRLIDLHMQEQVDLRSLKMFVLDEADLMLDMGFINDVKKIESYCPQK
KQTLLFSATMPEKIVALANRTLINPEKVEINPENTTAKTIGQLLYRLPKKNKTDLCLHLL
RNTINGKILIFRRTKFGVDKLEQTLLKNDYKVGSIHGDKSQILRNQAIEDFKNKKTHILV
ATDVAARGIDISKIDAVLNFDIPNVPETYVHRIGRTGRAGKSGIAFSFCSPDEDAYINLI
EELLGRPIKQVDDHPYPLVQPKNKKPSNTISKHKKSRKSANSKKNKKRWY
NT seq 1233 nt   +upstreamnt  +downstreamnt
atgcagttttctgatttacctttacacgaaaccatcttaagagcaattgctcaagaaaat
tacagaacagcaacacctgttcaagaaaaggcaattccgttagtattggctaaaaaagat
gtaattgtttctgcacaaacaggttctggtaaaactgctgcatttgcgttgcctattatt
caaatgttattagacgggcaaaattcagaaaaaaagaaaaagagaattaaagccttagta
gtaagtccaacaagggaattagcgttacaaatagaggaaaattttaaaaactacagcaaa
tttacggacttaaaaactaccactgtttatggtggcgtttctttaaatccgcaaaaagaa
gctttaaaagaaggtgtagatattttaattgcaactccaggtaggctaatcgatttacac
atgcaagagcaagtagatttacgttctctaaaaatgtttgttttagatgaagccgattta
atgttagacatgggtttcattaatgatgttaaaaaaattgaaagctactgtcctcaaaaa
aagcaaactttattattttctgcaaccatgccagagaaaattgtagcactggcaaacaga
acattaattaatcctgaaaaagtagaaattaatcctgagaatacaaccgcaaaaactata
ggtcagttattgtatcgtcttccaaagaaaaacaaaaccgatttgtgtttacacttatta
agaaacactataaacgggaaaatattaatttttagacgtactaaatttggtgtagataag
ttagagcaaaccttattaaaaaacgattataaagttggaagtattcatggagataaatcg
caaatattgcgtaatcaagcaattgaagacttcaaaaacaaaaaaacacatattttagta
gctacagatgttgctgctcgtggaattgacatcagtaaaattgacgctgttttaaatttt
gatattccaaatgtacctgaaacctatgttcacagaattggtagaacaggacgtgcagga
aaatctggaattgctttttcattctgtagtccagatgaagatgcatacatcaaccttatt
gaagaattattaggtagaccaataaaacaagtagacgatcatccctatccattagtacaa
ccaaagaacaaaaaaccgagtaatacgatcagtaaacataagaaaagtagaaaatctgct
aattctaaaaagaataaaaaacgctggtattaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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