KEGG   Tetrahymena thermophila: TTHERM_00161050
Entry
TTHERM_00161050   CDS       T01020                                 
Name
(RefSeq) Pre-mRNA-processing factor, putative
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
tet  Tetrahymena thermophila
Pathway
tet03040  Spliceosome
tet04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:tet00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    TTHERM_00161050
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    TTHERM_00161050
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tet03041]
    TTHERM_00161050
   04121 Ubiquitin system [BR:tet04121]
    TTHERM_00161050
   03400 DNA repair and recombination proteins [BR:tet03400]
    TTHERM_00161050
Enzymes [BR:tet01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     TTHERM_00161050
Spliceosome [BR:tet03041]
 Complex B
  Other components
   Prp19 complex
    TTHERM_00161050
 Complex C
   Prp19-CDC5 complex
    TTHERM_00161050
Ubiquitin system [BR:tet04121]
 Ubiquitin ligases (E3)
  U-box type E3
   TTHERM_00161050
DNA repair and recombination proteins [BR:tet03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    TTHERM_00161050
SSDB
Motif
Pfam: Prp19 WD40 ANAPC4_WD40 zf-Nse U-box Rtf2 zf-C3HC4_2 NBCH_WD40 SBBP zf-RING_UBOX
Other DBs
NCBI-GeneID: 7833959
NCBI-ProteinID: XP_001009835
TGD: TTHERM_00161050
UniProt: Q22W27
AA seq 508 aa
MSWNYCAITGEQLHEPVVSKKSGHVFEKRVIEKHIQSTGQCPITGQALSNDDLIPVQLNV
QTKPRSVTSNSIPGILKTFQNEWDALMLETYNLKQHLETVRQELSHALYQHDAACRVIAR
LIKERDEARFEVAQLQEKLRQGKMELEEADAQNEQQQEQTNNKLPQNIIDSINETALKLN
QIRKDRKKDAEYNSKFAATEVISSYGPKETVGLHSTTNPGINALDYNRQRNLVISGGKDG
SVILYNTVQNVIEGTVELNKHIVALTFLGNDENPHFVAVTEHAAHLYQFQAENKQFNSLY
TYNTNSSFTSVSAHPNGSLFVLSAKDGSVTYHDAISASLVLEVNDLVGKLSVNSIQVHPD
GNLLGIGCSDGSVKLWNISSNEIMTSLEDNVNGAIDLISFSENGYILSVGSTVSKVVKIY
DLRKAKCIKTLFGEGDEFSLSSIEFDLSGNVFAAGSTTGQIKLYETKKWNHLSTFSYHTA
AVKSLKFGNFSKELVSGSLDRNLIISSQ
NT seq 1527 nt   +upstreamnt  +downstreamnt
atgtcttggaattattgtgctataactggagaatagcttcatgaacccgtagtttcaaaa
aagagcggtcatgtttttgaaaaaagagttattgaaaaacatatttaatcaactggttaa
tgcccaattactggctaagccttaagcaacgatgatttgattccagtttaattaaatgtc
taaactaaacctagatctgtcacttcaaattctattcctggaatattaaaaacattttag
aacgaatgggatgcattaatgctcgaaacttataatttaaaataacatttggaaacagtt
cgttaagagctctcccatgctctttactagcatgatgctgcctgtagagttattgctcgt
ttgatcaaagaaagagatgaagctagatttgaagttgcctagctttaagaaaagttaaga
taaggtaaaatggaattagaagaagcagatgcttaaaatgaataataacaagagcaaaca
aacaataagcttccttaaaatattattgattcaattaatgaaacagctttaaagttaaac
taaataagaaaagatagaaagaaagatgctgaatacaatagcaagtttgcagctactgag
gtcatttcgagctatggtcctaaggaaactgttggcttacatagtactacaaaccctgga
attaatgctttagattataatcgttagagaaatttagttattagtggtggtaaagacgga
tctgttatcctttacaatactgtttaaaatgttattgaaggaacagtggaattaaataaa
catattgttgccttgacatttttaggaaacgatgaaaatccccactttgttgctgttact
gaacacgcagctcatctctactaattctaagctgaaaataaataatttaatagtttatat
acctacaacactaattcttcatttacctctgtttctgctcatcctaacggatctctattc
gtactttctgccaaagacggttcagtaacataccatgatgcaatttctgcttctctcgtt
ttagaagttaatgatttagttggaaagctcagtgttaacagtatttaagtacatcctgat
ggtaaccttcttggtatcggatgtagtgatggctcagttaaattgtggaatatatcttct
aacgaaataatgacatctttggaagacaatgtcaatggagcaatagacttgatcagtttt
agtgaaaacggttatattttatcagtaggtagtacagttagtaaagtagtaaagatctac
gatttaagaaaagctaagtgcattaaaactttgtttggtgaaggagatgaattttctttg
tcaagcattgaatttgacctttctggtaatgtatttgctgctggttctactacaggataa
ataaaactctacgaaactaagaaatggaaccacctttcaacattctcttatcatacagct
gccgttaaatctttgaagtttggtaatttctcaaaagaattagtttctggttctttggat
agaaatttaattatttcttcgtaatga

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (94)   
   KEGG ORTHOLOGY (1)   
   RefGene (89)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   TGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (116)   

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