KEGG T01020: TTHERM

Tetrahymena thermophila: TTHERM_00392850

Entry

TTHERM_00392850 CDS T01020

Definition

ATP dependent DNA ligase domain containing protein (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

tet Tetrahymena thermophila

Pathway

tet03410	Base excision repair
tet03420	Nucleotide excision repair
tet03430	Mismatch repair
tet03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:tet03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:tet03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:tet03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:tet03450]

SSDB

Motif

Pfam:

DNA_ligase_OB_2 DNA_ligase_A_M DUF4544 DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

TGD:

UniProt:

AA seq 555 aa
MIKIDLTKPVFLNFNQSKFWEISLLDGNKSQIRYGKLVQGEEIEEKTQIVQKQHKDTDSC
LDYIIRVIENKKLKGYSGDIPMKKNEPQIIIPANNASGFSIQISAPKSVENNANDDKDSK
VDSNTQAYLQENKTWSSQFVILTLSGNEVEEIIGKLGIKKTWEKSSTILSANQCKLYFKN
QIEEYERKGYVRDDSQYNFQLNEVNKHFSAQNGSSNNNQLDLNQKGKKKNFNKDSGLYDD
SHSNISGISDQSDLTARSGGSQLDLSFDKGDDDDGNSSVVVTGEIKKGSLGANGSMDSGV
LLAQAMPDEMDPTGWYASEKMDGVRAVWTGKTFYSRNGNEFYPPPFFIQNFPNCTLDGEL
FTKRDDFQRCVGIVKTKNGNEEKDERWKDIVYLVYDCPKLLKPFKDRIKALQEQIPKLGN
KYIKVLPHKIVESREQLESELDRVLKNNGEGLMLRDPNSMYECRRSKTLLKVKTFTDEEA
TVIGSERGEGRCADMMGALVCRMKNGKEFKIGSGFNDDQRRRPPKKGSVITFKYQNLTKD
GKPRFPIFLRIKEDE

NT seq 1668 nt +upstreamnt +downstreamnt
atgatcaaaattgatttaacaaaacctgtatttcttaattttaatcaatcaaagttttgg
gaaatcagcctgcttgatggaaataaatcttaaatcagatatggaaagttggtttaaggt
gaagagattgaagagaaaacttaaattgtccaaaagtagcacaaagacactgactcttgt
ttagattacataataagagtgattgaaaacaaaaaattgaaaggatatagcggagatatt
cccatgaaaaagaatgagccttaaatcatcattcctgcaaataacgcaagtggattttca
atttaaatttcagcacctaaatctgttgaaaataatgctaacgatgataaagattctaaa
gttgattcaaatactcaagcgtatttataggaaaacaaaacttggtcatcataatttgta
attttaactctgtctggcaatgaagtagaagaaattataggcaaactaggaataaaaaag
acatgggaaaaaagttctacaatattaagtgcaaactagtgtaaattgtatttcaaaaat
taaattgaggaatacgaaagaaagggatatgtgagagatgatagtcaatataatttttag
ctaaatgaagttaataaacacttttcagcataaaatggatctagtaataataattagctt
gatctcaactagaaaggcaaaaagaaaaattttaataaagattcagggttatacgacgat
tcacattcaaatatttcaggtatctcagattagtcagatttaactgctaggtctggtggc
tcttaattagatttatcattcgacaagggtgatgatgatgatggtaatagctcagttgtt
gtaactggagaaattaaaaaaggttctttaggtgctaacggaagtatggattcaggtgta
cttttagcttaagcaatgccagatgaaatggatccaactggctggtatgcaagtgaaaaa
atggatggagtcagagctgtttggactggaaagacattttattctaggaatggtaacgaa
ttctaccctcctccatttttcatttaaaatttcccaaattgcactttagatggggaattg
tttacaaaaagagatgatttctagcgttgtgtgggtattgttaagacaaaaaatggaaat
gaagaaaaagatgaaaggtggaaagatattgtttacttagtttacgactgtcctaaatta
ttaaaaccctttaaagatagaataaaagctttacaagaataaattccaaaacttggtaac
aagtacattaaagttcttccacataagatagtggagagcagagaataacttgaatcagag
cttgatagagtcttaaaaaataatggcgaaggtttgatgttaagagatcctaattcaatg
tatgaatgcagaagatcaaaaacccttcttaaggtaaaaacatttacagatgaagaagct
acagtaattgggagtgaaagaggtgaaggaagatgtgcagatatgatgggtgctttggta
tgccgtatgaaaaatggaaaagaattcaaaataggatcaggattcaatgatgactaaaga
agaaggccacctaaaaaaggaagtgtgataacattcaaataccaaaatcttaccaaagat
ggtaaaccaagattccctattttcttgagaataaaagaagacgaatga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
   TGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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