KEGG   Tetrahymena thermophila: TTHERM_01122740
Entry
TTHERM_01122740   CDS       T01020                                 
Name
(RefSeq) 3'-5' exonuclease
  KO
K12591  exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
tet  Tetrahymena thermophila
Pathway
tet03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tet00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TTHERM_01122740
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tet03019]
    TTHERM_01122740
Messenger RNA biogenesis [BR:tet03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     TTHERM_01122740
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC PMC2NT
Other DBs
NCBI-GeneID: 7835788
NCBI-ProteinID: XP_001019575
TGD: TTHERM_01122740
UniProt: Q23S17
AA seq 881 aa
MASNNKIKDLDEILNQKDFMKQVLQKDASLVRLSNSLPQNDEMKFYMNNEQLKQKQKAIN
VKILHQLKKIASFIQFEQASSIDLNHFSHIIDMNDLLFENIDTSLDKIKKINNVTESSLF
DPSKTISSDKGFKPISGEESEDIITIATKEKPQNHFKDCIDNSIEHPFIPVIKEKLNADV
PLDDVIVQVQREGAESFFKTIQDPLQYEFPHPYAYEIENFNFSEQQLQTDNIIVQEPISL
KEELVFVDKEDILDEMIESLKQCSEVAIDLEHHSYRSFNGITCLMQISSRTKDYIVDVFS
VWKSLHKLNAVTTDKNIVKVLHGADMDIQWLQRDFGIYIVNLFDTGQAARTLSMPSYALA
YLLQSISKVPTDKKYQLADWRIRPLPREMISYARSDTHYLLSIYDNLRIQLVSKALQQGQ
NASHFIESVLNKSRAICLKKYVKPILDDEKYHSILQNQRIILSDRKFRILKRLLEWRYKM
AAKYDENPTFVLANDILFNIVNRLPQTQKEFASSNLKLSYVCQYHANEILSIIKEEIESE
QKSKSGESESATKNQSEMETEDLIYASRNHNNNISGYQIINTQSHQMEQELEDEEVSFKF
EVIDVQIGVYQGNLNILEDHILSSSTSAEIQSKIDKINSSFFYADPVDFYCEKYPFMREA
YELAKLQEEEIMKKRNDLAYIQSKNPFEGENEGQTNKEEEERDIYLAFDKEKGPSSKPKE
VEQINVPDLPQSYEDQFKTSLKKRKYNFGNEAKRNNNQDEEGEEDNENGEKIYKKRSTGQ
KSTFDMLIEQGLREQTDSEESDSEEGEQQQKKKKREVTEEEKKQIEDNFNQFADKIRNRI
NKDPKFKSGINAQKKFNSSNNKKGGNKKNNKFISKFNKSGF
NT seq 2646 nt   +upstreamnt  +downstreamnt
atggctagcaataataaaattaaggatttagatgaaattcttaactaaaaggatttcatg
aagtaggttttgtagaaagatgcaagtcttgttcgtttgagtaactctcttccataaaat
gatgaaatgaagttttacatgaacaatgagcaactaaaataaaagcaaaaggctatcaat
gttaaaattctccaccagttaaagaaaatagcatcatttatataatttgagcaagcttct
agcattgacttaaaccattttagccatatcatagacatgaatgatctactttttgagaat
atcgacacttcattggacaaaattaaaaaaattaataatgtcactgagtcttctcttttc
gatccttctaagactatatcctctgacaagggcttcaagcctattagtggggaggaatcc
gaagacataatcacaatagcaacaaaagaaaaaccttaaaaccattttaaagattgcatt
gataattcaatagaacatcctttcattcctgtcatcaaagaaaagctaaatgcagatgtt
ccattagatgatgtcatagtttaagtatagagagagggagctgaaagcttttttaaaacc
atttaagaccctttataatatgaatttccccacccttatgcttatgaaattgagaatttc
aatttctcagagtaacaattacagacagataatataatagtttaggagcctattagtctt
aaagaggagttagtgtttgtagataaagaagatattttagacgaaatgatagagtctctg
aagtaatgtagcgaagtagctattgatttagaacaccattcatatcgttcattcaacggt
attacttgcttgatgcagatttctagcagaactaaagactacattgtggatgtcttcagt
gtatggaaatctctacataagcttaatgcagttactacagataaaaatattgttaaagtt
cttcatggtgcagatatggatattcaatggttacaaagagattttggaatttatattgtt
aatttattcgataccggataagcagccagaactttatctatgcccagctatgcattagct
tatcttttataatctatttcaaaagtacccacagataaaaagtaccaattagctgattgg
agaatccgtcctctcccaagagaaatgataagttatgctagatcagatacacactatttg
ttatcaatttatgacaatttaagaattcaacttgtaagcaaagcactttagtaaggataa
aatgcttctcactttattgagagtgttctgaataagtctagagctatttgcctcaaaaag
tatgtcaagccaattttagatgatgaaaaatatcactcaattttacaaaattaacgtatc
atcttatctgacagaaagttccgcattttaaaaagactcctcgaatggagatataaaatg
gctgctaaatatgatgaaaatcctacctttgttttagctaatgatattcttttcaatatt
gtaaatagactaccctaaactcagaaagagtttgcatcttcaaatcttaagcttagttac
gtatgccaatatcatgcaaacgaaattctttctattattaaggaagaaattgaatctgaa
caaaagtctaaatctggagaatcagagagtgccaccaaaaattaaagtgaaatggaaact
gaagatctgatttatgcctctcgtaaccataataataacatatcaggatactaaataatt
aacactcagagtcaccaaatggagtaggagcttgaagatgaagaggtttccttcaaattt
gaagtaattgatgtataaattggggtgtattaaggcaatttgaatattttagaagaccac
atactatcatcttcaacctctgctgaaatataatcaaaaatagataaaattaattcttct
ttcttctatgcagatcctgtagatttttattgcgaaaaatacccttttatgagagaagct
tatgaactcgctaaattgcaagaagaagaaattatgaaaaaaagaaatgacctggcctac
atttagagtaaaaacccatttgaaggtgaaaacgaaggacaaactaacaaggaagaagaa
gaaagagatatttatttagcatttgataaggaaaaaggaccttcttctaaaccaaaagaa
gttgaacaaataaatgtgcctgatttacctcaatcttatgaagattagtttaaaacaagt
ctcaaaaagagaaaatataattttggcaatgaagcaaaaagaaacaacaactaagatgaa
gagggagaagaagataatgaaaatggagaaaaaatttacaaaaaaagatctactggataa
aaaagtacattcgatatgttaatagagtaaggtctcagagaacaaactgactctgaagaa
tcagattctgaagaaggtgaataatagtagaagaagaaaaaaagagaggttacagaagaa
gaaaaaaaacaaatcgaagataattttaaccagtttgcagataaaataagaaatagaatc
aataaagatcctaagtttaaatctggtatcaatgcataaaaaaaattcaacagtagcaat
aataaaaagggtggtaataaaaaaaataataagtttataagcaagttcaacaaaagcgga
ttttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   TGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (47)   

Download RDF
DBGET integrated database retrieval system