KEGG   Tannerella forsythia: BFO_0211
Entry
BFO_0211          CDS       T01682                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
tfo  Tannerella forsythia
Pathway
tfo03030  DNA replication
tfo03410  Base excision repair
tfo03420  Nucleotide excision repair
tfo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tfo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BFO_0211 (ligA)
   03410 Base excision repair
    BFO_0211 (ligA)
   03420 Nucleotide excision repair
    BFO_0211 (ligA)
   03430 Mismatch repair
    BFO_0211 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tfo03032]
    BFO_0211 (ligA)
   03400 DNA repair and recombination proteins [BR:tfo03400]
    BFO_0211 (ligA)
Enzymes [BR:tfo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BFO_0211 (ligA)
DNA replication proteins [BR:tfo03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BFO_0211 (ligA)
DNA repair and recombination proteins [BR:tfo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BFO_0211 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BFO_0211 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     BFO_0211 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BFO_0211 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT BRCT_2 RNA_ligase Cytidylate_kin2 ADH_N EAD10 Auto_anti-p27
Other DBs
NCBI-ProteinID: AEW21253
UniProt: G8UIY3
Position
238012..240111
AA seq 699 aa
MSGYSRFDFYPFVYKNLGFFIYVCNLVSFTEFMNGIENKIKSLREELEQHNYRYYVLSMP
TISDKQYDEMMKELQFLEEQHPAFFDPHSPTQRVGSDLSKEFEQVPHRYPMLSLGNTYSR
EEVRDFYERTARTLNEPFEIVAELKYDGTSISLIYEDGRLMQAVTRGDGIRGDDVTANVR
TIRSIPLKLHGKDYPQRFEIRGEIVLPWTEFERLNKEREAQEEPLFANPRNAASGTLKQQ
NPQIVAARRLDAYLYYMLGEELPADEHYGNLQKARTWGFKVSEELRVCRNLQDINDYIAY
WDVGRKNLPVATDGIVLKVNSLKQQRFLGHTAKSPRWAISYKFQAERAETRLTSVSYQVG
RTGVVTPVANLDPVQLAGTVVKRASLHNADIIAGLDLHIGDRVYVEKGGEIIPKIVGVNT
EARPMLMGDKVTFIHHCPECRTALIRPEGEAAHYCPNERTCPPQVKGKIEHFVTRKAMNI
NMGPETVEDLYHAGYVRNVADLYTLRTVDLLRLERWAEKSAQNLMDSLEASKQVPFERVL
YGLGIRYVGETVAKRLAYAYGSMEHLEQASLESLIQTDEIGERIAQSVIDFFADERNRNM
IDRLKEYGLQMALQEDAPATRSEKLNGLAFVISGTFTRHSRDEYKAMIEQNGGKNTGSIS
GKTDYLLAGANMGPAKLAKAEKMGIKIINEEEFLNILAE
NT seq 2100 nt   +upstreamnt  +downstreamnt
gtgtccggatattcccgatttgatttttatccgttcgtgtataaaaatctcggctttttt
atctatgtttgcaacttggtatcgtttacggagttcatgaacgggatagaaaataaaata
aaatcgttaagggaagagctggagcagcacaactacaggtattacgtgctttccatgccg
acgatttccgacaagcagtacgatgaaatgatgaaggagttgcagtttctcgaagagcaa
catcccgcgtttttcgatccccattcgcccacccaacgtgtaggaagcgatttatcgaaa
gaatttgaacaggtgccccatcgctatccgatgctctcgttgggaaatacgtattcgaga
gaagaagttcgggatttttatgaacggacagcccgaacactcaacgaacctttcgagatc
gtcgccgaactgaaatacgacggtacttccatctcactgatttacgaagacggccggttg
atgcaggccgttacccgtggcgacggaatacgtggtgacgatgtgacggccaatgtgaga
acgatccggtcgatcccgctgaaactgcatggaaaagattatccccaacggttcgagata
cgcggagagattgttcttccgtggacggaattcgagcgactgaacaaagagcgcgaggcg
caggaagagccgttgtttgccaatccgcgcaatgcggcgtccggcacgttgaaacagcaa
aaccctcagatcgtagcggcccgacggcttgatgcgtatctctattatatgctgggcgag
gaattacccgccgacgagcattatgggaatttgcaaaaggcacgtacgtggggattcaaa
gtatccgaggaacttcgtgtctgccgtaatctgcaggacataaacgattatattgcctat
tgggacgtgggacgaaaaaacttgccggttgcgacggacggtatcgtactaaaagtcaat
tcactgaaacagcagcgtttcctcgggcatacggccaagagtcctcgctgggccatctcg
tataaatttcaagctgagcgcgccgaaacacgtctgacgtccgtctcctatcaggtggga
cggacaggcgttgtcaccccagttgccaacttggaccccgttcaactggccggaacagtc
gtcaaacgcgcatcgctgcataatgccgatatcattgccggactcgatttgcatatcggc
gaccgcgtatatgtcgagaagggcggagaaattattccgaaaatcgttggggtaaatacg
gaagcacgtccgatgttgatgggcgataaggtcaccttcatacaccattgtccggaatgc
aggacggccttgatacgccccgaaggagaggcggcgcattattgcccgaacgagcgaacg
tgtccgcctcaggtgaaagggaagatcgagcatttcgtgacacgcaaagcgatgaatatc
aatatggggcctgagacggtcgaagatttgtatcatgccggttatgtgcgtaacgtggcc
gatctgtacaccctccgcaccgtcgatctgttacgtctcgaacgttgggcggagaagagc
gcgcaaaacctgatggacagccttgaagcctcgaaacaggtaccttttgagcgggtgctg
tacggtctggggattcggtatgtgggagaaaccgttgccaaacgattagcgtatgcgtac
ggcagcatggaacatctggaacaggcttcgctcgaatcgctcatacagacggacgagatc
ggcgaacggattgcacaaagcgtgatcgatttcttcgccgacgaacgcaatcgaaacatg
atcgaccgactgaaggaatacggtttgcagatggctttgcaggaagatgcaccggctaca
cgctcggagaaattgaatggactggcatttgtcatcagtggtacgtttacacgccattcg
cgcgatgaatacaaagccatgatcgagcaaaacggtggaaaaaatacgggttctatttcc
gggaaaaccgactacctccttgccggagccaacatggggccggccaaattggccaaagcc
gaaaaaatgggaattaaaattatcaatgaagaggaattcttaaacatattagcggaatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (45)   

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