KEGG   Tannerella forsythia: BFO_0926
Entry
BFO_0926          CDS       T01682                                 
Name
(GenBank) putative cold-shock DEAD-box protein A
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
tfo  Tannerella forsythia
Pathway
tfo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tfo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BFO_0926
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tfo03019]
    BFO_0926
   03009 Ribosome biogenesis [BR:tfo03009]
    BFO_0926
Messenger RNA biogenesis [BR:tfo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BFO_0926
Ribosome biogenesis [BR:tfo03009]
 Prokaryotic type
  rRNA helicases
   BFO_0926
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1
Other DBs
NCBI-ProteinID: AEW21778
UniProt: G8UPI9
Position
complement(1004776..1006578)
AA seq 600 aa
MRPYQERNQLKTFEELGIASPVLKAIREMGYEAPMPVQEEVIPFLLGEDNDVIALAQTGT
GKTAAYGLPVLQKTDIHKQTPQALILCPTRELCLQIAGDLSDYSKYIDALKVLPVYGGSS
IDSQIKALKKGVHVVVATPGRLLDLMNRRTVNLQEIKHVILDEADEMLNMGFSESINAIL
AEVPEGRNMLLFSATMPQEIARITKEYMRDPKEIIIGRRNEGNQNIRHLYYMVHAKDKYL
ALKRLVDFYPNIYGIVFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRLR
NLQLLVATDVAARGLDVDNLTHVIHYGLPDDVESYTHRSGRTARAGKTGISISICHVREK
SRIRQIEKIVNKQFEKGTLPSGNAICEKQLFYFIDQLEKVKVNEDEIASLMPSVFRKLEW
LEKEDIIKRLISLEFNRMIDYYRDAGEIEDVDEPSARGKKESERSARRAQKAENGFKRLT
LNFGKADGIFPAQVIELINRCVPGRKVEIGRIDLREKVSYFEVDKGEAQRVVDSMNQYEV
DGRPIFVELTRGNDSANGGKGRRKERKTEQPSSRGGASRRPGREKPWRQASSRRKNRGRS
NT seq 1803 nt   +upstreamnt  +downstreamnt
ttgcggccttatcaagaaagaaatcagttgaaaacatttgaagaattagggattgcctca
cctgttttgaaggcgatccgcgagatgggctacgaagcccccatgccggtacaagaggaa
gtgattccttttctgctgggagaagataacgacgtcatcgcattggcacagaccggtacg
ggaaaaaccgcggcctacggtctgcccgtgctgcaaaaaacagacatacacaaacagaca
ccgcaggctctcatcctctgccccacccgcgaactgtgtctgcaaattgccggcgacctg
agcgattactccaaatacattgatgcgctcaaggttctgcccgtttatgggggatcaagc
atcgacagtcagatcaaagcactcaaaaaaggggtacacgtggttgtggctacgcccgga
cgcctgctcgacctgatgaaccggcggacggtaaacctgcaagagattaagcacgtcatc
ctcgacgaggccgacgagatgctcaacatggggttttccgaaagcatcaacgccattctg
gccgaagtacccgaggggcgtaacatgctgctcttctcggccaccatgccgcaggagatt
gcgcggatcacgaaagaatacatgcgtgacccgaaagaaatcatcatcggacgcagaaac
gaagggaatcaaaacatccgccacctttattatatggtgcatgccaaagacaagtacctc
gcgcttaaacggctcgtcgacttctatcccaacatctacgggatcgtattctgccgcacc
cgcaaagagacgcaggagatcgccgacaaacttattcaggacggctacaatgccgactcg
ctccatggcgaactgagtcaggcgcaacgcgattacgtgatgcagaagttccgcctccgc
aacctgcagttgcttgtggctaccgacgtggcggcgcgaggcctcgacgtagacaatctt
acccatgtgattcattacggcttgcccgacgatgtggaatcatacacgcatcgcagcgga
cgtaccgcacgcgccggaaaaacgggtatctctatttcgatctgccatgtccgcgagaaa
agcagaatacggcagattgaaaaaatcgtcaacaagcaattcgaaaaaggtacgctgccc
tcgggcaacgccatctgcgaaaagcaactcttctacttcatcgaccagcttgaaaaagtg
aaagtaaacgaagatgagatcgcctcgctcatgccctccgtgttccgcaaactcgaatgg
ctcgaaaaggaagatattatcaaacgcctgatatcgctcgaatttaaccggatgatcgat
tattatcgcgacgccggagagattgaagacgtagacgaaccctcggctcgtggcaaaaaa
gagtccgaacgctccgctcgccgcgcacagaaagccgagaacggcttcaaacgccttacc
ctgaacttcggaaaggccgacggtatcttcccggcccaagtcatcgaactcatcaaccga
tgcgtgcccggccgcaaggtcgagatcggccgtatagacttgcgcgagaaggtttcctat
ttcgaggtcgacaaaggcgaagcacaacgggtagtcgacagcatgaatcagtatgaagtc
gacggacgccccatcttcgtggagctgactcgtggcaacgattccgcgaacggtgggaaa
ggccgacgaaaagaacggaaaaccgaacaacccagcagccgaggcggtgcatcacgccgt
ccggggcgcgaaaagccatggcgacaagcgtcctcgcgccgtaagaaccgcggacggtcg
taa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (33)   

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